PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_9982.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 1004aa MW: 109774 Da PI: 7.7106

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_9982.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.1e-28	688	738	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ MLOC_9982.2 688 EKTVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV 738 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	677	758	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-24	691	738	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-19	896	989	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-23	903	987	No hit	No description
PROSITE profile	PS51745	18.007	906	989	IPR000270	PB1 domain
SMART	SM00666	7.2E-21	906	989	IPR000270	PB1 domain
Pfam	PF00564	9.5E-15	907	987	IPR000270	PB1 domain
CDD	cd06407	4.75E-39	907	987	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MKGRSKARAG PNKARTSTAN FQFSFFHLAA AAAAAERASR QTGAPLERNG GGAALWWSTE 60 PFLELLLAGG GGQRRAKEEE GGKSRRGTHH TITSEQLPIS FFASFLQKMM SSPLQPPSPR 120 NPNTNANAYA YAKIFPPSNT WFAQDALLGF EQESTSSEGS LTCMEGGDAQ PGISVGRALS 180 SEGDLDLLEQ LLSGDNAWLE VAPNTSRSPN FFASPSTFLS DATTTTTMPA GASSALWIQP 240 PSSTVRQRFE QALDHIKQMQ RDAGMLVQLW VPQKNSDGKL VLTTSGQPFT LDNTSDRLIQ 300 FRDVSTHYHF SADAGSEASP VGLPGRVFIG KLPEWSPDVR LFTSYEYPRV KYAQDLDVHG 360 TMGLPVFEKG SYSCLGVMEL IMTRQKLNFT SEINNICNAL QAVNLRSTEV SSTPRATKFN 420 SASYRDALPE ILEVLRAACV THNLPLAQTW VTCAQQGKGG SRHTDENYPY CISTIDTACY 480 VNDPQMQNFH DSCSDHHLLR GQGVAGKAFE TNQPCFLPDI GSSAKEHYPL SHHAKIFNLK 540 GAVAIRLRCT RTGTADFVLE FFLPTNCEAL EEQKAVLDSL SGTMRNTCRT LRVVTDKEMG 600 DEAMLDRNEL NTFGPQGKNK VEELSFGDQA TEHREEASWT SLAGTSKESD LAELSMHGML 660 SPEGQGLSLA GAQTSAQGSK GKRRTKTEKT VSLPVLRQYF AGSLKDAARS LGVCPTTLKR 720 ICRQHGINRW PSRKIKKVDH SLRKLQQIID SVHGGETAFQ LNTLYKDLTN TSVSSDNNLS 780 GSITVPPHKQ SNLTDFERHG HHRLSNNVPS TSHSHSSCSQ SSDSSPSSCS GGSTKYPPQA 840 GVDLLMSGNP VNHSPVQTLQ TENASIIGHF PVQEAPDLLH NLNQKALGGQ HSSRSPSPPK 900 QNADTGMRIK AAFGSEKVRF RLKPECSFQE LKQEMARRLS IVDISFLIVK YLDDDLEWVL 960 MTCDADLQEC LHVYKLANLQ TVKISVHLAP IPEARVTVGR TGLS

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MKGRSKARAG PNKARTSTAN FQFSFFHLAA AAAAAERASR QTGAPLERNG GGAALWWSTE  60
PFLELLLAGG GGQRRAKEEE GGKSRRGTHH TITSEQLPIS FFASFLQKMM SSPLQPPSPR  120
NPNTNANAYA YAKIFPPSNT WFAQDALLGF EQESTSSEGS LTCMEGGDAQ PGISVGRALS  180
SEGDLDLLEQ LLSGDNAWLE VAPNTSRSPN FFASPSTFLS DATTTTTMPA GASSALWIQP  240
PSSTVRQRFE QALDHIKQMQ RDAGMLVQLW VPQKNSDGKL VLTTSGQPFT LDNTSDRLIQ  300
FRDVSTHYHF SADAGSEASP VGLPGRVFIG KLPEWSPDVR LFTSYEYPRV KYAQDLDVHG  360
TMGLPVFEKG SYSCLGVMEL IMTRQKLNFT SEINNICNAL QAVNLRSTEV SSTPRATKFN  420
SASYRDALPE ILEVLRAACV THNLPLAQTW VTCAQQGKGG SRHTDENYPY CISTIDTACY  480
VNDPQMQNFH DSCSDHHLLR GQGVAGKAFE TNQPCFLPDI GSSAKEHYPL SHHAKIFNLK  540
GAVAIRLRCT RTGTADFVLE FFLPTNCEAL EEQKAVLDSL SGTMRNTCRT LRVVTDKEMG  600
DEAMLDRNEL NTFGPQGKNK VEELSFGDQA TEHREEASWT SLAGTSKESD LAELSMHGML  660
SPEGQGLSLA GAQTSAQGSK GKRRTKTEKT VSLPVLRQYF AGSLKDAARS LGVCPTTLKR  720
ICRQHGINRW PSRKIKKVDH SLRKLQQIID SVHGGETAFQ LNTLYKDLTN TSVSSDNNLS  780
GSITVPPHKQ SNLTDFERHG HHRLSNNVPS TSHSHSSCSQ SSDSSPSSCS GGSTKYPPQA  840
GVDLLMSGNP VNHSPVQTLQ TENASIIGHF PVQEAPDLLH NLNQKALGGQ HSSRSPSPPK  900
QNADTGMRIK AAFGSEKVRF RLKPECSFQE LKQEMARRLS IVDISFLIVK YLDDDLEWVL  960
MTCDADLQEC LHVYKLANLQ TVKISVHLAP IPEARVTVGR TGLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_9982.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358600	0.0	AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196252.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A287S4X8	0.0	A0A287S4X8_HORVV; Uncharacterized protein
STRING	MLOC_9982.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-180	Nin-like family protein