PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9956.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 449aa    MW: 50978.9 Da    PI: 5.8884
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9956.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.5e-16222301190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fYn Y+ e+GF +r  +s+++  +++ t ++ vC + g++++e+++         +  ++C+a +++++++d+ w+++++++eHnH+l+
  MLOC_9956.1 222 EFYNLYSWEIGFGIRYGQSRTN-AQKSRTVQDIVCGCAGRPKKENTN---------SVACNCQALIRLHRTNDNGWYIHDFRSEHNHHLS 301
                  6*****************9999.66668999********99997666.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-12222301IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEAAPAGMHP QPESLTQILL SFSSPCEDTN LGHPQEDEEE QVGDVDSEAF GSKGGSWVRA  60
ENRLQPHQTT TYPSPCLDDE PDPQNGTING DTELTHFFSD TETQGEIQDF EMCSTTPSWV  120
GKNRSGNERC DSPLVCIQNT PTLFKWTEAT TANLICVQKS GQEQCTWKRR IRLGKIPDQR  180
EPKMGRACAL EKAMRSYVDQ KSGQVVAPEI GREFDSLAEA FEFYNLYSWE IGFGIRYGQS  240
RTNAQKSRTV QDIVCGCAGR PKKENTNSVA CNCQALIRLH RTNDNGWYIH DFRSEHNHHL  300
SSSCGEKLHW PSHRNIDTNT KDIVKHLMSN NIGLTKVFCV IASFFGSMEN VPFNKRSLKY  360
MCTRMNQETA DDDIRKTIDL FSELKKNDPM FSDSVLVDSD SKIQALMWTN GKSRYQYKMF  420
GDAITFDTTY RTNQYDMPFG LFVGVNHHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181332.11e-120putative protein FAR1-RELATED SEQUENCE 10 isoform X2
RefseqXP_020198214.11e-121protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBLA0A287KCP20.0A0A287KCP2_HORVV; Uncharacterized protein
STRINGMLOC_9956.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-26FAR1-related sequence 5