PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9943.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 272aa    MW: 29999.7 Da    PI: 6.8033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9943.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13223270347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+  E+e l+d+v+q+G+g+Wk I ++      gRt+ ++k++w++ 
      MLOC_9943.1 223 RWSSVEEEALKDGVEQFGSGNWKDILSHNAdvfIGRTPVDLKDKWRNM 270
                      9********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.904216272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-14216272IPR009057Homeodomain-like
SuperFamilySSF466891.87E-15217271IPR009057Homeodomain-like
SMARTSM007173.0E-5220272IPR001005SANT/Myb domain
CDDcd116605.37E-20222272No hitNo description
PfamPF002494.2E-10223270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
GNAFSQEALK GLFGDRAKAE RRVRDLLAAE WAAIGPSRLE LAAEQIAGDG AVETWRAADE  60
TVRAKYRILV GEEKAREILS RIEDPISSPQ VHKVIHDLKS SCADLHNVVD DPLPAAKAAA  120
DKVLAARMDN AVNINAEVNN QAANCSIAGS SAVNDQGETL RKGMPSSLMD WNPTAQSLLW  180
EDSIDSDGSR SQLHRPHLPS PRRIPVSPLQ VAENKSMRRR ARRWSSVEEE ALKDGVEQFG  240
SGNWKDILSH NADVFIGRTP VDLKDKWRNM MR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.11e-168uncharacterized protein LOC109770747
TrEMBLF2EH800.0F2EH80_HORVV; Predicted protein
STRINGMLOC_9943.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-15TRF-like 5