PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_9927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 19107.4 Da PI: 12.1687 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v+q G g+W+++a+ g++R++k+c++rw +yl MLOC_9927.1 17 KGPWTALEDRLLTEYVQQQGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 64 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.027 | 12 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 13 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.91E-21 | 18 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.81E-10 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-7 | 68 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAMDAMSSAV LQGGWRKGPW TALEDRLLTE YVQQQGEGSW NSVAKLTGLR RSGKSCRLRW 60 VNYLRPDLKR GKITPDEESV ILHLHAMLGN RCGRRSRGAC RGGRTTRSRT TGGRTSRRRG 120 RPGGPGRSCC TSTSSSSSSS TASTSTPCTS SSSSSSRCRC RWNRRATTTS RSSGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-14 | 10 | 91 | 20 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_9927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960450 | 1e-169 | EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182485.1 | 5e-60 | transcription factor WER-like | ||||
TrEMBL | M0ZFM0 | 4e-62 | M0ZFM0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_9927.2 | 6e-63 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-39 | myb domain protein 305 |