PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9840.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 290aa    MW: 32036.7 Da    PI: 4.7927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9840.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-102351146
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ll da k+lG++ W+ Ia+ ++ gRt++ +k+r+ +
      MLOC_9840.5  2 LLCDAQKLLGNK-WTEIAKVVP-GRTDNAVKNRFST 35
                     689*********.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.391141IPR017930Myb domain
PfamPF002498.8E-8235IPR001005SANT/Myb domain
CDDcd001672.38E-6236No hitNo description
Gene3DG3DSA:1.10.10.607.4E-11240IPR009057Homeodomain-like
SuperFamilySSF466894.91E-9244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLLCDAQKLL GNKWTEIAKV VPGRTDNAVK NRFSTLCKRR AKDDELFEEN STVCSNANAK  60
RVLTQTGGLT CGAPSSSPPI KNMSSCNPDF KENLAPNMKS FGQEKSIRHD SRQPLSRICP  120
DNQSVNIVKT QSLVTKTSTK QLHGEEQSCV KHEGNFLKRN DPKLATLLQQ ADLLSSLATK  180
VNTENTSQSM DEAWQKLQHH LVKKDDNDMS ESSMSGTASL LDDLDDLIVD PYENEEEDEQ  240
KSREQNGVTS QIAPDQIMDN CPVDQITEEN SLCGNTLSSS MEPCPGNLCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9840.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613120.0AK361312.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160172.10.0transcription factor MYB124-like isoform X1
RefseqXP_020160174.10.0transcription factor MYB124-like isoform X3
TrEMBLA0A287HIG20.0A0A287HIG2_HORVV; Uncharacterized protein
STRINGMLOC_9840.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.13e-35myb domain protein 88