PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_9835.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32348.2 Da PI: 6.7218 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.2e-15 | 140 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ k++G g+W+ I+r + Rt+ q+ s+ qky MLOC_9835.2 140 PWTEEEHRLFLKGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 184 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.982 | 27 | 81 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.3E-4 | 31 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.95E-9 | 33 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-4 | 34 | 80 | No hit | No description |
PROSITE profile | PS51294 | 20.286 | 133 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-17 | 135 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-18 | 136 | 187 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 137 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 137 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-12 | 140 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-12 | 140 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MMAEAWMNVL PPPAPYFAGQ PCWAVQQERR GGGAWTLEEN KVFEEALAAI DLDAPDGWEM 60 VALMLPRKTV ADVVNHYRAL ENDVGFIEAG LVPFPHYDSS SPSSGFTLDW DGGSAGAGGF 120 RRGYCLKRGR ADQERKKGVP WTEEEHRLFL KGLKKYGRGD WRNISRNYVT SRTPTQVASH 180 AQKYFIRLTS GGKDNKRRSS IHDITTVNVP DEDDRNSPSG SPPSAVTTAD TKPSPSFGGQ 240 GQRHAFMPPT LPVGTLGGGH PYGNVKLEHQ SSFMDGGTVL DIDDSLLLQM QCGQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-13 | 29 | 100 | 5 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_9835.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361442 | 0.0 | AK361442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140K03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182102.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-72 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0ZFB4 | 0.0 | M0ZFB4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_9835.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 6e-75 | MYB family protein |
Publications ? help Back to Top | |||
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