PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9835.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 295aa    MW: 32348.2 Da    PI: 6.7218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9835.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-15140184347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ k++G g+W+ I+r   + Rt+ q+ s+ qky
      MLOC_9835.2 140 PWTEEEHRLFLKGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 184
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.9822781IPR017877Myb-like domain
SMARTSM007172.3E-43183IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-93387IPR009057Homeodomain-like
CDDcd001671.94E-43480No hitNo description
PROSITE profilePS5129420.286133189IPR017930Myb domain
SuperFamilySSF466891.22E-17135189IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-18136187IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-12137183IPR009057Homeodomain-like
SMARTSM007171.9E-13137187IPR001005SANT/Myb domain
PfamPF002494.6E-12140184IPR001005SANT/Myb domain
CDDcd001674.75E-12140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMAEAWMNVL PPPAPYFAGQ PCWAVQQERR GGGAWTLEEN KVFEEALAAI DLDAPDGWEM  60
VALMLPRKTV ADVVNHYRAL ENDVGFIEAG LVPFPHYDSS SPSSGFTLDW DGGSAGAGGF  120
RRGYCLKRGR ADQERKKGVP WTEEEHRLFL KGLKKYGRGD WRNISRNYVT SRTPTQVASH  180
AQKYFIRLTS GGKDNKRRSS IHDITTVNVP DEDDRNSPSG SPPSAVTTAD TKPSPSFGGQ  240
GQRHAFMPPT LPVGTLGGGH PYGNVKLEHQ SSFMDGGTVL DIDDSLLLQM QCGQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1329100576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9835.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614420.0AK361442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182102.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0ZFB40.0M0ZFB4_HORVV; Uncharacterized protein
STRINGMLOC_9835.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-75MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]