PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9498.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 94aa    MW: 9886.92 Da    PI: 10.4623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9498.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000356284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ Cg+ F +   L  H  +H
  MLOC_9498.1 62 FVCKTCGRAFETFQALGGHRTSH 84
                 89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-45785IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-65887No hitNo description
PfamPF139122.4E-106286IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9936284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGAGMKRARE EEPFVSLALS LSTDSSTSTT TSDNSSTGSP ATAPRKRTRR GRAVATSGEG  60
EFVCKTCGRA FETFQALGGH RTSHLRGNHG LELG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9498.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696831e-156AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21.
GenBankAK3721981e-156AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16.
GenBankEU8125631e-156EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198415.17e-44zinc finger protein ZAT6-like
TrEMBLA0A287SRY24e-59A0A287SRY2_HORVV; Uncharacterized protein
STRINGMLOC_9498.11e-60(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-08C2H2 family protein