PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_9448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 80aa MW: 9202.76 Da PI: 10.1892 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.4 | 1.1e-08 | 26 | 71 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 Y+ YA++ GF vr k s+ +ge +++ +vC + g + ++k + MLOC_9448.1 26 HYKMYARQKGFGVRYCFRKMSEASGELIRASLVCHRAGLKIKRKVD 71 7*************************************99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-6 | 26 | 71 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MPEVMSTPQQ PTAMMRFDTL EDAEKHYKMY ARQKGFGVRY CFRKMSEASG ELIRASLVCH 60 RAGLKIKRKV DTQNPQPIAP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_9448.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239385.1 | 5e-17 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A287XRT3 | 2e-52 | A0A287XRT3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_9448.1 | 2e-54 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 5e-07 | FAR1-related sequence 4 |