PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_81739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21004.6 Da PI: 8.6288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.6 | 4.4e-18 | 21 | 146 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ ++ + yfF+ r++ + r++ g W ++g++++ s ++ v MLOC_81739.1 21 EFDPTEDELVLHFLRPQLRGFPPRVAGAVVEADPCASPPWELLERHGLlRRGHGYFFAARRRGKV---RRTPEGGGGAWMHSGNKEDRRSVTELGVV 114 6************************999**************754444244477****9988653...344456799*******9988887777777 PP NAM 102 lkktLvfy.....kgrapkgektdWvmheyrl 128 + t++ y +g ++t Wvm ey++ MLOC_81739.1 115 ARWTMTRYcfyarDGAGAGRRSTGWVMSEYEI 146 7777765544465455555569********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.268 | 16 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-28 | 21 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-13 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDLGDAGGVV VKEEAGVEAE EFDPTEDELV LHFLRPQLRG FPPRVAGAVV EADPCASPPW 60 ELLERHGLLR RGHGYFFAAR RRGKVRRTPE GGGGAWMHSG NKEDRRSVTE LGVVARWTMT 120 RYCFYARDGA GAGRRSTGWV MSEYEITDPR CYRRADDGEE DQYWVLCHVR RSIRENVKPR 180 SRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_81739.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK377068 | 0.0 | AK377068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147G02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201278.1 | 1e-110 | NAC domain-containing protein 48-like | ||||
TrEMBL | M0ZCR7 | 1e-130 | M0ZCR7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_81739.1 | 1e-131 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 5e-10 | NAC domain containing protein 41 |