PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_81350.1
Common NameMLOC_81350.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 243aa    MW: 25956.2 Da    PI: 10.0928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_81350.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-1771120255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  MLOC_81350.1  71 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 120
                   7******99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-2570129No hitNo description
SuperFamilySSF541711.05E-2171130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3071129IPR001471AP2/ERF domain
PfamPF008472.5E-1071120IPR001471AP2/ERF domain
SMARTSM003801.4E-3571134IPR001471AP2/ERF domain
PROSITE profilePS5103222.58971128IPR001471AP2/ERF domain
PRINTSPR003676.4E-127283IPR001471AP2/ERF domain
PRINTSPR003676.4E-12110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQQGEYRSSS SSEGSAGSAA AAAAAAAAMA PLAAAAAAVA AKEEHNVTVA VAPPMPMAMA  60
MPLQQQQPRK QYRGVRMRKW GKWVAEIREP HKRTRIWLGS YATPVAAARA YDTAVFYLRG  120
RSARLNFPDE ISALALSSPE AAEAGGGEMA GELADGGALS AASIRKKAIE VGSRVDALQT  180
GMTTMVAAPA HHRERQRLHH HHHAEPHGEE LHRHVKQQRT AWNGRAKNPD LNQAPSPDTS  240
DAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1570133468ATERF1
3gcc_A7e-1570133468ATERF1
5wx9_A2e-14711321476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_81350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8987720.0KC898772.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988030.0KC898803.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988110.0KC898811.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988120.0KC898812.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988130.0KC898813.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191028.11e-102ethylene-responsive transcription factor ERF008-like
SwissprotO221746e-48ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLU5NGV41e-174U5NGV4_HORVU; Uncharacterized protein
STRINGMLOC_81350.11e-174(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-40DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Houston K, et al.
    Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(41): p. 16675-80
    [PMID:24065816]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]