PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_81003.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 302aa    MW: 32501 Da    PI: 4.931
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_81003.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.5e-14111165461
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                    kr +r+ +NRe+ArrsR+RK+a +   e  v +L aeN +L    ++l+++ +k k 
  MLOC_81003.8 111 AKRVKRMLSNRESARRSRKRKQAHQSDIESQVTQLRAENASLL---NRLTDMTQKYKE 165
                   79*************************************9887...888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-14108172IPR004827Basic-leucine zipper domain
PfamPF001708.2E-13110164IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.036110165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-11112163No hitNo description
Gene3DG3DSA:1.20.5.1705.5E-12112164No hitNo description
CDDcd147022.08E-17113163No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
PfamPF124986.2E-20179282IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MECSGDEVVE LSCARAGGGG GGGDPGEYAA VLKRKLQLYC AAVAKTMEAK PIESSLSGLN  60
SQASDTSPLV SQASFDGDGT VVQGKPANSC TSKEQSDDDG DLEENTDPAN AKRVKRMLSN  120
RESARRSRKR KQAHQSDIES QVTQLRAENA SLLNRLTDMT QKYKEASLGN RNLTVDIETM  180
RRKVNIAEEA VRRVTGASLM FSTTSNNVPT ASCVSVAASA DAAPTEESMS HFLQGLLEDD  240
LIKHDLSEVA TPLPSGEEMD SRPASLRRVA SLENLQKRIH RDSVHSEDTS IFSDDEVPAK  300
AQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRSRKRK
2124131RRSRKRKQ
3126131SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_81003.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515890.0AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183207.10.0light-inducible protein CPRF2-like isoform X1
SwissprotQ990903e-41CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A287QEN10.0A0A287QEN1_HORVV; Uncharacterized protein
STRINGMLOC_81003.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-36bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]