PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_81003.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 217aa MW: 22807.3 Da PI: 5.1181 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.5 | 1.6e-09 | 186 | 216 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 kr +r+ +NRe+ArrsR+RK+a + e MLOC_81003.7 186 AKRVKRMLSNRESARRSRKRKQAHQSDIESQ 216 79**********************9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.7E-7 | 183 | 217 | No hit | No description |
PROSITE profile | PS50217 | 8.852 | 185 | 217 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-8 | 185 | 217 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.43E-7 | 187 | 217 | No hit | No description |
CDD | cd14702 | 5.76E-11 | 188 | 217 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 190 | 205 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MDSAAGTATS PSPPPSAINP PPLAASISTT APAPKLHFFC DSPAPSSRCS GAIVILCPCE 60 QRCYQGWEAE RLFREMECSG DEVVELSCAR AGGGGGGGDP GEYAAVLKRK LQLYCAAVAK 120 TMEAKPIESS LSGLNSQASD TSPLVSQASF DGDGTVVQGK PANSCTSKEQ SDDDGDLEEN 180 TDPANAKRVK RMLSNRESAR RSRKRKQAHQ SDIESQV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 199 | 205 | RRSRKRK |
2 | 199 | 206 | RRSRKRKQ |
3 | 201 | 206 | SRKRKQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_81003.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK251589 | 0.0 | AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183207.1 | 1e-80 | light-inducible protein CPRF2-like isoform X1 | ||||
TrEMBL | A0A287QER8 | 1e-157 | A0A287QER8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_81003.8 | 2e-97 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.3 | 3e-11 | bZIP family protein |