PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_81003.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 266aa MW: 28505.8 Da PI: 5.9098 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46 | 1.2e-14 | 186 | 240 | 4 | 61 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr +r+ +NRe+ArrsR+RK+a + e v +L aeN +L ++l+++ +k k MLOC_81003.3 186 AKRVKRMLSNRESARRSRKRKQAHQSDIESQVTQLRAENASLL---NRLTDMTQKYKE 240 79*************************************9887...888888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.6E-12 | 182 | 239 | No hit | No description |
SMART | SM00338 | 1.1E-14 | 183 | 247 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.036 | 185 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.7E-13 | 185 | 239 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.91E-12 | 187 | 238 | No hit | No description |
CDD | cd14702 | 1.59E-18 | 188 | 238 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 190 | 205 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDSAAGTATS PSPPPSAINP PPLAASISTT APAPKLHFFC DSPAPSSRCS GAIVILCPCE 60 QRCYQGWEAE RLFREMECSG DEVVELSCAR AGGGGGGGDP GEYAAVLKRK LQLYCAAVAK 120 TMEAKPIESS LSGLNSQASD TSPLVSQASF DGDGTVVQGK PANSCTSKEQ SDDDGDLEEN 180 TDPANAKRVK RMLSNRESAR RSRKRKQAHQ SDIESQVTQL RAENASLLNR LTDMTQKYKE 240 ASLGNRNLTV DIETMRRKVY PFLDNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 205 | RRSRKRK |
2 | 199 | 206 | RRSRKRKQ |
3 | 201 | 206 | SRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_81003.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251589 | 0.0 | AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183207.1 | 1e-112 | light-inducible protein CPRF2-like isoform X1 | ||||
Swissprot | Q99090 | 4e-26 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A287QF31 | 0.0 | A0A287QF31_HORVV; Uncharacterized protein | ||||
STRING | MLOC_81003.8 | 1e-130 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.3 | 6e-28 | bZIP family protein |
Publications ? help Back to Top | |||
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