PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_80133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 422aa MW: 47732 Da PI: 7.7989 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.9e-14 | 85 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y++YA + GFs + ks++ ++g + + + Cs++g+ + + +r++ +++C a++ +k+++d ++++ +l+HnH+l+ MLOC_80133.1 85 KYYKQYAVDSGFSAITLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDTKLDHNHPLN 168 69***********999988887.7888***************99998.....89999**************99999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-11 | 85 | 168 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-24 | 272 | 365 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MEAPIEADGK SSEQLPGNGS LPKIAEKSQD LGGNPGMELP PLHQGKEVIL VEDNDSGQED 60 GGSAKVDENA PRIGLRFKTY DDALKYYKQY AVDSGFSAIT LKSSYLKSGV CRRLVLGCSR 120 SGRGRANACY LSRETAKINC PARISLKLRQ DRWLHIDDTK LDHNHPLNQS SDSPMSCYKK 180 LTDAKSVENA SRLKGRRNVP IADKEQGKFT EIGRLKFGEG DDEQIQKFFG SMQNKNPNFF 240 YLVDLDKQGR LRNLFWSDAR SQAAHEYFGH DVVYFDTSYL TEKYDLPLVF FTGMNNHGHP 300 VLFGTGLLSD LSAESYTWLF RAFLACMKGC YPDAIITEHY NAILDAVREV FSQVKHRLCL 360 YRIMRDVAEN LKVHAEFKTI KRALKKVTYG SLKDSEFEAD WKKIIEEHVQ EISGRVESNN 420 VL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_80133.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157633.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A453JBH2 | 0.0 | A0A453JBH2_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453JBQ8 | 0.0 | A0A453JBQ8_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_80133.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-63 | FAR1-related sequence 8 |