PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79984.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 452aa    MW: 52014.5 Da    PI: 6.9146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79984.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.5e-2298184190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   kfYn+YA+  GFs+r+ + k+ + +g+  +r fvCsk+g ++++ ++   +++++a++rt C a+++ + +++g w+v+k+ l+HnH+l+
  MLOC_79984.1  98 KFYNSYAEANGFSIRRCHRKY-RADGTLASRYFVCSKSGVKATHLTH--VTKKEQATSRTACMARVQFSITREGIWNVQKVILDHNHQLV 184
                   6***************98666.59999***************99887..899999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1898184IPR004330FAR1 DNA binding domain
PfamPF105519.6E-36307400IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAIDLKDEGS AANGSQGTDM EASPPDQSLP TAPPPVQSPR EYPNFPLDET SGQPRARNTP  60
RNDFDLQDGD NANNQNTSSE NSVPTVGMFF QSEEEAYKFY NSYAEANGFS IRRCHRKYRA  120
DGTLASRYFV CSKSGVKATH LTHVTKKEQA TSRTACMARV QFSITREGIW NVQKVILDHN  180
HQLVSPDKRH MLRSQRQLLD ADRHMIKQMR TSGIRQSEIY DYCEQLYGKD GVPFLQMDCN  240
NYLRSERMKY LESKDAETLM EYLKNKQVED PSFFYAVQPD KVEGRIMNIF WVDGQAIMDY  300
SVFGDAISFD TTFSTNKFKM PFAPLVGVNH HKQTILFGAA LLYDETADSF EWLFRTFLQA  360
MSGKQPETIF TDQCAAIIKA IGNVFPNTRH RLCLWHLYQN AAKHLSQVIS DHPEFLREFK  420
RCVYEDRSVA HFENRWHGLL AKYQVVDNSW MN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703729.11e-166protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A287VGH10.0A0A287VGH1_HORVV; Uncharacterized protein
STRINGMLOC_79984.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-92FAR1-related sequence 5