PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79950.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 265aa    MW: 29368.8 Da    PI: 10.7871
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79950.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57353.37.5e-172584297
        DUF573 42 kksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97
                  ++++++++sksqlveK+rrLK+K++++v++ + sg  +sf+++h+q ife+++ iW+
  MLOC_79950.1  2 RRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGAAFSFRSPHEQAIFEIARNIWR 58
                  7899**************************8889**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-15257IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRGSGAAFS FRSPHEQAIF EIARNIWRPT  60
NKHGRDPSAD SDDEEAVVAA AVVAPTAAPA NTSPNGEVKS PSGRQRRRRR SVESAAPTAP  120
TPAPVPVPAT ILVQPPQQVQ VPVSVPVKMD NSLPALPQAP MPVTVTMDGS EPLRFPVMSP  180
QSGVVDVEKN FLTPLFKEMI HAVVNIGSNP FGVKLPELPN GLPMEGEKWR NQRILELEVY  240
LKRIELLQDQ VKATLEELKS STPRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767670.0AK376767.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174717.11e-140probable transcription factor At5g28040
TrEMBLF2EKT90.0F2EKT9_HORVV; Predicted protein
STRINGMLOC_79950.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-18DNA-binding storekeeper protein-related transcriptional regulator