PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7981.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 288aa    MW: 30555.3 Da    PI: 8.6867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7981.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
      MLOC_7981.1 126 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 170
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.403119175IPR017930Myb domain
SuperFamilySSF466895.01E-17120176IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-10123166IPR009057Homeodomain-like
SMARTSM007178.5E-10123173IPR001005SANT/Myb domain
PfamPF002491.4E-10126169IPR001005SANT/Myb domain
CDDcd001672.17E-9126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS AGKQGEIMLC EGGGGGSSSG SGLRLFGVQV HVAAGRSARA  60
GASMRKSYSM DCLQLAAAPS SIVSPSSSSS SSVLLSIDEG LERASNGYLS DGPHGRLVQE  120
RKKGVPWSEE EHRLFLVGLE KLGKGDWRGI SRSYVTTRTP TQVASHAQKF FLRQSSMGKK  180
KRRSSLFDMV PICENGIRVS EPLTNNSEDA STSLPRYKSP DMASIDLNST QEDDMAGVPL  240
LSASGASPRA PFPAVLMEQP PHGHGHGHHC SPLDLELSMS LSPPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591960.0AK359196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184061.11e-164transcription factor SRM1-like
TrEMBLM0Z9R90.0M0Z9R9_HORVV; Uncharacterized protein
STRINGMLOC_7981.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-47MYB_related family protein