PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_79666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17845.4 Da PI: 6.3545 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.4e-06 | 113 | 133 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk Fs++ +L H+r+H MLOC_79666.1 113 CRECGKLFSSWRSLFGHMRSH 133 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.0E-6 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 26 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.062 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 111 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.38E-5 | 112 | 134 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-5 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 113 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MDAVGVGELA AAGMHHHHHH HHHHHHRCKV CGKGFSCGRS LGGHMRSHIS LGEALPEADD 60 DLIRRSSANG GRTTANGAVG YGLRENPKKT RRLSDFADEE EDQGGDAGDQ RACRECGKLF 120 SSWRSLFGHM RSHAPGAARD HDEYDDDVDL LGEEEYSFAA EAE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_79666.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182857.1 | 2e-77 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3B6C387 | 8e-83 | A0A3B6C387_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M328 | 8e-83 | A0A446M328_TRITD; Uncharacterized protein | ||||
STRING | MLOC_79666.1 | 1e-114 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 5e-19 | C2H2-like zinc finger protein |