PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_79632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 95aa MW: 11469.2 Da PI: 10.7294 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.9 | 5.9e-12 | 14 | 55 | 48 | 90 |
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 err+++++rt+C a++ vk++ d+ w+vt+++ HnH+l MLOC_79632.1 14 IAPERRRNTTERTNCPARMFVKRR-DNAWVVTEINDYHNHPLI 55 467999******************.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-9 | 14 | 55 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
KIKRKVDTQN PQPIAPERRR NTTERTNCPA RMFVKRRDNA WVVTEINDYH NHPLIKKWSL 60 TGYLRSHRHI PEEEQQFVKL LHSCNLEPSR QMQLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_79632.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231561.1 | 5e-28 | protein FAR1-RELATED SEQUENCE 5 isoform X3 | ||||
Refseq | XP_024314049.1 | 5e-28 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_024314050.1 | 5e-28 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_024314051.1 | 5e-28 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A287GLU6 | 2e-63 | A0A287GLU6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_79632.1 | 1e-65 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |