PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_79421.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 464aa MW: 50903.6 Da PI: 7.3206

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_79421.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.5e-37	92	151	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s MLOC_79421.3 92 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 151 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	88	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	95	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-31	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MLYHFELSVS CLLNNIFQVV TKLGNDANSN DAPCVSDQLL NVEATPFCSK HGEQNDQAIN 60 KHGVEMRTGF KIEEIKTGSD GSGQDKVLKK PDIIVPCPRC NSMETKFCYF NNYNVSQPRH 120 FCRNCQRYWT AGGNIRNVPV GSGRRRNKHA SHFRHAIMSC DANIAAPGDV SNEIHHLALP 180 LLPQVLPGPI KENETVKEFG TGVPVCKSMT SVHNIEKQKD AHLVSLASDD NNEDQSCPSS 240 VTVSGCSENQ TPDSAVKKEP SNVSGYYNGI AMPHPHGPAL VFPWSPGWNS IAVMAAAQCS 300 TEPIHGLQNV KHGPSWVSPL MMAAPGICTP VVPFPMMPQL WSCIPGWPNG MWSSPCPESN 360 GPPNKITCSQ DNSPILGKHS READLQEEKR ENNIRVPKTL RIDDPAEATK SSVRDTPGIK 420 PDEKGMFEPL QTKVLKNDKT PESPRALQAN LAAFSRSQSF QERP

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MLYHFELSVS CLLNNIFQVV TKLGNDANSN DAPCVSDQLL NVEATPFCSK HGEQNDQAIN  60
KHGVEMRTGF KIEEIKTGSD GSGQDKVLKK PDIIVPCPRC NSMETKFCYF NNYNVSQPRH  120
FCRNCQRYWT AGGNIRNVPV GSGRRRNKHA SHFRHAIMSC DANIAAPGDV SNEIHHLALP  180
LLPQVLPGPI KENETVKEFG TGVPVCKSMT SVHNIEKQKD AHLVSLASDD NNEDQSCPSS  240
VTVSGCSENQ TPDSAVKKEP SNVSGYYNGI AMPHPHGPAL VFPWSPGWNS IAVMAAAQCS  300
TEPIHGLQNV KHGPSWVSPL MMAAPGICTP VVPFPMMPQL WSCIPGWPNG MWSSPCPESN  360
GPPNKITCSQ DNSPILGKHS READLQEEKR ENNIRVPKTL RIDDPAEATK SSVRDTPGIK  420
PDEKGMFEPL QTKVLKNDKT PESPRALQAN LAAFSRSQSF QERP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_79421.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A453ER26	0.0	A0A453ER26_AEGTS; Uncharacterized protein
STRING	MLOC_79421.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-56	cycling DOF factor 2