PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_79421.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 472aa MW: 51505.2 Da PI: 7.4714

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_79421.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	100	159	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s MLOC_79421.2 100 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 159 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	96	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	103	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-31	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MAARDRGDTA IKLFGRTIPL LDAAAEVVTK LGNDANSNDA PCVSDQLLNV EATPFCSKHG 60 EQNDQAINKH GVEMRTGFKI EEIKTGSDGS GQDKVLKKPD IIVPCPRCNS METKFCYFNN 120 YNVSQPRHFC RNCQRYWTAG GNIRNVPVGS GRRRNKHASH FRHAIMSCDA NIAAPGDVSN 180 EIHHLALPLL PQVLPGPIKE NETVKEFGTG VPVCKSMTSV HNIEKQKDAH LVSLASDDNN 240 EDQSCPSSVT VSGCSENQTP DSAVKKEPSN VSGYYNGIAM PHPHGPALVF PWSPGWNSIA 300 VMAAAQCSTE PIHGLQNVKH GPSWVSPLMM AAPGICTPVV PFPMMPQLWS CIPGWPNGMW 360 SSPCPESNGP PNKITCSQDN SPILGKHSRE ADLQEEKREN NIRVPKTLRI DDPAEATKSS 420 VRDTPGIKPD EKGMFEPLQT KVLKNDKTPE SPRALQANLA AFSRSQSFQE RP

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MAARDRGDTA IKLFGRTIPL LDAAAEVVTK LGNDANSNDA PCVSDQLLNV EATPFCSKHG  60
EQNDQAINKH GVEMRTGFKI EEIKTGSDGS GQDKVLKKPD IIVPCPRCNS METKFCYFNN  120
YNVSQPRHFC RNCQRYWTAG GNIRNVPVGS GRRRNKHASH FRHAIMSCDA NIAAPGDVSN  180
EIHHLALPLL PQVLPGPIKE NETVKEFGTG VPVCKSMTSV HNIEKQKDAH LVSLASDDNN  240
EDQSCPSSVT VSGCSENQTP DSAVKKEPSN VSGYYNGIAM PHPHGPALVF PWSPGWNSIA  300
VMAAAQCSTE PIHGLQNVKH GPSWVSPLMM AAPGICTPVV PFPMMPQLWS CIPGWPNGMW  360
SSPCPESNGP PNKITCSQDN SPILGKHSRE ADLQEEKREN NIRVPKTLRI DDPAEATKSS  420
VRDTPGIKPD EKGMFEPLQT KVLKNDKTPE SPRALQANLA AFSRSQSFQE RP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_79421.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A3B6GQB9	0.0	A0A3B6GQB9_WHEAT; Uncharacterized protein
TrEMBL	A0A453ER38	0.0	A0A453ER38_AEGTS; Uncharacterized protein
STRING	MLOC_79421.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-57	cycling DOF factor 3