PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7940.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family RAV
Protein Properties Length: 357aa    MW: 38814.6 Da    PI: 9.8552
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7940.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1261109155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a+++++g
  MLOC_7940.1  61 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 109
                  689***9788.8*********......44**********99*************98 PP
2B394.85.9e-30175270187
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +  
  MLOC_7940.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCSAY 270
                  89*************************9987776644455999************************************************96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1661118IPR016177DNA-binding domain
CDDcd000188.93E-2361117No hitNo description
PfamPF008471.4E-761109IPR001471AP2/ERF domain
SMARTSM003801.2E-2262123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-2062117IPR001471AP2/ERF domain
PROSITE profilePS5103220.98262117IPR001471AP2/ERF domain
PRINTSPR003671.8E-66374IPR001471AP2/ERF domain
PRINTSPR003671.8E-699119IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-38170290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-30172281IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-29173265No hitNo description
SMARTSM010192.7E-22175283IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578175284IPR003340B3 DNA binding domain
PfamPF023629.9E-28175270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGVEILSSTG EHSSQYSSGA ASTATTESGV GGRPPTAPSL PVSIADESAT SRSASAQSTS  60
SRFKGVVPQP NGRWGAQIYE RHARVWLGTF PDEDSAARAY DVAALRYRGR EAATNFPCAA  120
AEAELAFLAA HSKAEIVDML RKHTYTDELR QGLRRGRGMG ARAQPTPSWA REPLFEKAVT  180
PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDGEGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMTSCP ADDRGAATAS  300
PPVSEPTKGE QVRVVRLFGV DIAGEKRGRA APVEQELFKR QCVAHSQHSP ALGAFVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4817228111115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720820.0AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201133.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
RefseqXP_020201484.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-144Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A3B6FIV40.0A0A3B6FIV4_WHEAT; Uncharacterized protein
STRINGMLOC_7940.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-90related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]