PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_79356.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SRS | ||||||||
Protein Properties | Length: 122aa MW: 12279.5 Da PI: 6.1278 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 83.7 | 4.4e-26 | 3 | 56 | 101 | 154 |
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+evsseavfrcvr++ vd++++e+aYqtavsigGhvfkGiL+d G+++ MLOC_79356.3 3 AADRFPREVSSEAVFRCVRLGPVDEADAEVAYQTAVSIGGHVFKGILHDVGPDT 56 5678***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.2E-23 | 5 | 55 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 3.4E-23 | 6 | 54 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MMAADRFPRE VSSEAVFRCV RLGPVDEADA EVAYQTAVSI GGHVFKGILH DVGPDTSITR 60 TGHHAAEGSS PSTAAAGGAE GGSGSTGAAA VSSSAVVMDP YPTPGPYGAY GGAPFFHGHH 120 PR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_79356.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373525 | 0.0 | AK373525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3033N03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156435.1 | 2e-56 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | F2EBK0 | 2e-80 | F2EBK0_HORVV; Predicted protein (Fragment) | ||||
TrEMBL | M0Z916 | 2e-78 | M0Z916_HORVV; Uncharacterized protein | ||||
STRING | MLOC_79356.1 | 3e-79 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18120.1 | 2e-18 | SHI-related sequence 4 |