PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_79223.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 488aa MW: 54315.1 Da PI: 6.5126

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_79223.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	177	205	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ MLOC_79223.6 177 KTERRLAQNREAARKSRLRKKAYVQQLET 205 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	173	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	175	219	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-8	175	219	No hit	No description
Pfam	PF00170	8.7E-9	177	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.05E-7	177	218	No hit	No description
PROSITE pattern	PS00036	0	180	195	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.6E-28	258	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MPKAWILREL QPAAAAYFGE LEEALIHGAC AAGVDPVMIE SDAHTKSAAA VAGYLAARPP 60 TLEIFPSWPM SHLQRPYSGN SQSVGSTDSS SAQNTMSQAE LVSPVSIRTD SGPRQQQQQQ 120 QQQDQQEVLM VTIDDYNYSQ GLGAAPATAQ SFQQHAGAQD KRKHGSTKKD GKLVDPKTER 180 RLAQNREAAR KSRLRKKAYV QQLETGRIRL QQIEQELQRG RSQGLLTGGC SAPGEMSSAA 240 VMFDMEYARW LDEDSKYMAE IQGALQAQVL DANLSTIVED CMRHYDELFH LRAVLARSDV 300 FHLMTGMWAT QSERCFLWMA GFRPSEILKM LIPQLDPSTE QQLLGMCNLQ QSSEQAEEAL 360 SQGLQQLHQS LADAVGAGPL NDGADVANYA TLMALALDRL DNLESFYRQA DNLRQQTLHH 420 MRRILTTRQT ARCFVSLGEY HRRLRALSSI WASRPRENLG MAENVSSTAA EFQPIIHHQS 480 QQNQFSGL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MPKAWILREL QPAAAAYFGE LEEALIHGAC AAGVDPVMIE SDAHTKSAAA VAGYLAARPP  60
TLEIFPSWPM SHLQRPYSGN SQSVGSTDSS SAQNTMSQAE LVSPVSIRTD SGPRQQQQQQ  120
QQQDQQEVLM VTIDDYNYSQ GLGAAPATAQ SFQQHAGAQD KRKHGSTKKD GKLVDPKTER  180
RLAQNREAAR KSRLRKKAYV QQLETGRIRL QQIEQELQRG RSQGLLTGGC SAPGEMSSAA  240
VMFDMEYARW LDEDSKYMAE IQGALQAQVL DANLSTIVED CMRHYDELFH LRAVLARSDV  300
FHLMTGMWAT QSERCFLWMA GFRPSEILKM LIPQLDPSTE QQLLGMCNLQ QSSEQAEEAL  360
SQGLQQLHQS LADAVGAGPL NDGADVANYA TLMALALDRL DNLESFYRQA DNLRQQTLHH  420
MRRILTTRQT ARCFVSLGEY HRRLRALSSI WASRPRENLG MAENVSSTAA EFQPIIHHQS  480
QQNQFSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_79223.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370195	0.0	AK370195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106J11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176121.1	0.0	transcription factor TGAL5-like isoform X4
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A287G8D5	0.0	A0A287G8D5_HORVV; Uncharacterized protein
STRING	MLOC_79223.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]