PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79223.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 524aa    MW: 57884.9 Da    PI: 6.615
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79223.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62.1e-11213241533
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                   k err+++NReAAr+sR+RKka++++Le+
  MLOC_79223.3 213 KTERRLAQNREAARKSRLRKKAYVQQLET 241
                   88*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-6209275IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.9E-8211255No hitNo description
PROSITE profilePS502179.22211255IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.61E-7213254No hitNo description
PfamPF001709.5E-9213241IPR004827Basic-leucine zipper domain
PROSITE patternPS000360216231IPR004827Basic-leucine zipper domain
PfamPF141449.5E-28294368IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MPRLGRGESS WGTAGDRDRA AVPFGQALGH GIQGHAPPAN FLRELQPAAA AYFGELEEAL  60
IHGACAAGVD PVMIESDAHT KSAAAAVAGY LAARPPTLEI FPSWPMSHLQ RPYSGNSQSV  120
GSTDSSSAQN TMSQAELVSP VSIRTDSGPR QQQQQQQQQD QQEVLMVTID DYNYSQGLGA  180
APATAQSFQQ HAGAQDKRKH GSTKKDGKLV DPKTERRLAQ NREAARKSRL RKKAYVQQLE  240
TGRIRLQQIE QELQRGRSQG LLTGGCSAPG EMSSAAVMFD MEYARWLDED SKYMAEIQGA  300
LQAQVLDANL STIVEDCMRH YDELFHLRAV LARSDVFHLM TGMWATQSER CFLWMAGFRP  360
SEILKMLIPQ LDPSTEQQLL GMCNLQQSSE QAEEALSQGL QQLHQSLADA VGAGPLNDGA  420
DVANYATLMA LALDRLDNLE SFYRQADNLR QQTLHHMRRI LTTRQTARCF VSLGEYHRRL  480
RALSSIWASR PRENLGMAEN VSSTAAEFQP IIHHQSQQNQ FSGL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79223.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701950.0AK370195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176119.10.0transcription factor TGAL5-like isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A287G8C50.0A0A287G8C5_HORVV; Uncharacterized protein
STRINGMLOC_79223.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-128bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]