PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_79223.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 489aa MW: 54386.2 Da PI: 6.5126

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_79223.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	178	206	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ MLOC_79223.2 178 KTERRLAQNREAARKSRLRKKAYVQQLET 206 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	174	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	176	220	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-8	176	220	No hit	No description
SuperFamily	SSF57959	6.05E-7	178	219	No hit	No description
Pfam	PF00170	8.7E-9	178	206	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.6E-28	259	333	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MPKAWILREL QPAAAAYFGE LEEALIHGAC AAGVDPVMIE SDAHTKSAAA AVAGYLAARP 60 PTLEIFPSWP MSHLQRPYSG NSQSVGSTDS SSAQNTMSQA ELVSPVSIRT DSGPRQQQQQ 120 QQQQDQQEVL MVTIDDYNYS QGLGAAPATA QSFQQHAGAQ DKRKHGSTKK DGKLVDPKTE 180 RRLAQNREAA RKSRLRKKAY VQQLETGRIR LQQIEQELQR GRSQGLLTGG CSAPGEMSSA 240 AVMFDMEYAR WLDEDSKYMA EIQGALQAQV LDANLSTIVE DCMRHYDELF HLRAVLARSD 300 VFHLMTGMWA TQSERCFLWM AGFRPSEILK MLIPQLDPST EQQLLGMCNL QQSSEQAEEA 360 LSQGLQQLHQ SLADAVGAGP LNDGADVANY ATLMALALDR LDNLESFYRQ ADNLRQQTLH 420 HMRRILTTRQ TARCFVSLGE YHRRLRALSS IWASRPRENL GMAENVSSTA AEFQPIIHHQ 480 SQQNQFSGL

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MPKAWILREL QPAAAAYFGE LEEALIHGAC AAGVDPVMIE SDAHTKSAAA AVAGYLAARP  60
PTLEIFPSWP MSHLQRPYSG NSQSVGSTDS SSAQNTMSQA ELVSPVSIRT DSGPRQQQQQ  120
QQQQDQQEVL MVTIDDYNYS QGLGAAPATA QSFQQHAGAQ DKRKHGSTKK DGKLVDPKTE  180
RRLAQNREAA RKSRLRKKAY VQQLETGRIR LQQIEQELQR GRSQGLLTGG CSAPGEMSSA  240
AVMFDMEYAR WLDEDSKYMA EIQGALQAQV LDANLSTIVE DCMRHYDELF HLRAVLARSD  300
VFHLMTGMWA TQSERCFLWM AGFRPSEILK MLIPQLDPST EQQLLGMCNL QQSSEQAEEA  360
LSQGLQQLHQ SLADAVGAGP LNDGADVANY ATLMALALDR LDNLESFYRQ ADNLRQQTLH  420
HMRRILTTRQ TARCFVSLGE YHRRLRALSS IWASRPRENL GMAENVSSTA AEFQPIIHHQ  480
SQQNQFSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_79223.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370195	0.0	AK370195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106J11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176121.1	0.0	transcription factor TGAL5-like isoform X4
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A287G8B5	0.0	A0A287G8B5_HORVV; Uncharacterized protein
STRING	MLOC_79223.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]