PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78920.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 734aa    MW: 78499.5 Da    PI: 5.3765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78920.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042177198223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +Cp Cgk F++  ++  H+r+H
  MLOC_78920.1 177 QCPECGKLFRNDKSMFGHLRSH 198
                   7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.284176203IPR007087Zinc finger, C2H2
SuperFamilySSF576679.71E-8176198No hitNo description
SMARTSM003550.013176198IPR015880Zinc finger, C2H2-like
PfamPF139120.0017177198IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.150.10.103.8E-5307479IPR011049Serralysin-like metalloprotease, C-terminal
SuperFamilySSF576679.71E-8567594No hitNo description
PROSITE profilePS5015710.097572599IPR007087Zinc finger, C2H2
SMARTSM003550.026572594IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-8572595IPR007087Zinc finger, C2H2
PROSITE patternPS000280574594IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MSKRSDLLCI LLLSLLAASL RLPAAAGSNR QLAVAAAAAA AARIGDEFLC QDPIGRPRSS  60
SLMSSNAGDE LSSLPAAAPS AAFTQEGFTA PAAAFTQEGF LGDEAFSSGD GYPKEDEDEL  120
LSGDGYAGDP HRSVEEEELL GDEEEHEDDL FFSVKQGAQV KPSSNNSEEN GSSAVVQCPE  180
CGKLFRNDKS MFGHLRSHPN RGYKKGSGHL KSRPSRGYKP PARSKPLPSR NGKPSQLPSR  240
NGRLSSPPVN DSRPVARYSQ RDPELNRFEV MMAYVMLTVK QRGDGVAQDQ SRKRKHESRE  300
LDVPEEDSVR SKAGDDVVLG DEHGTSVAEM PGDDAVHRSE QGSSLAEMAG DDVVLHGSVA  360
VMAGNDAVHR SEQGSSLAEM AGDDVVLPNE HHGSVAVMAG DDAMHLSEQG SSLAEMAGDD  420
GVLGDKHSTS VAEIVGDDVV LGDKHSTSVA EMARDDAVHR SEQGSSLVEM AGDDAVHRSK  480
QGSSLAEMAG DDAVDRSEQG SSLAEMAGDD AVLRNEHCSS IAVMAAGDAV VHTEHGNVEV  540
PRKKGRKKSK ESTEAHRKEK EVPSASTVKR PYTCKQCKAE FPTHQALGGH MAAHNKDKRI  600
QAQNEQAAAA WEANQSQIDR SLNKLVTSSM KPAWEAHQSQ TGINQSLNRQ EIKGGGEEPR  660
QGGGMFMSTR ELLMERFTKL FNQGLQSRQE AGGSKRQHTE KKDGGSPSVA PPLTDGGRRR  720
PFDIDLNVVA PEKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313820.11e-63uncharacterized protein LOC112270196
TrEMBLA0A287WBA90.0A0A287WBA9_HORVV; Uncharacterized protein
STRINGMLOC_78920.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2082455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.17e-06zinc-finger protein 10