PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7891.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 109aa    MW: 12037.5 Da    PI: 9.2743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7891.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.9e-1377109238
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgt 38 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f t
  MLOC_7891.2  77 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFET 109
                  7********.**********7.....337********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-577109IPR001471AP2/ERF domain
PROSITE profilePS5103216.87177109IPR001471AP2/ERF domain
PfamPF008471.1E-777109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1777109IPR001471AP2/ERF domain
CDDcd000181.40E-1577109No hitNo description
SuperFamilySSF541715.95E-1177109IPR016177DNA-binding domain
PRINTSPR003675.1E-97889IPR001471AP2/ERF domain
PRINTSPR003675.1E-9100109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRTYVEPHSQ SCPAQLAFRA VKCSVLSLGA YIECHLLARS AGQERSPDVQ QSAAMGEQYT  60
PAEQASHGGG GGVPERRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFET
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7891.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721501e-103AK372150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978318.26e-19ethylene-responsive transcription factor ABI4-like
SwissprotQ9FH542e-17EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A287G9K48e-74A0A287G9K4_HORVV; Uncharacterized protein
STRINGMLOC_7891.13e-76(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]