PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78827.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 319aa    MW: 35514.5 Da    PI: 6.7499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78827.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1973123155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+G+r+++ +g+W+AeIrdp     + +r++lg+f +aeeAa+a++ a+++++g
  MLOC_78827.1  73 THYRGIRQRP-WGKWAAEIRDPI----KgARVWLGTFNSAEEAARAYDVAARRIRG 123
                   68********.**********72....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1373123IPR001471AP2/ERF domain
CDDcd000184.38E-3473133No hitNo description
Gene3DG3DSA:3.30.730.101.2E-3274132IPR001471AP2/ERF domain
PROSITE profilePS5103224.65874131IPR001471AP2/ERF domain
SMARTSM003803.7E-3774137IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2374132IPR016177DNA-binding domain
PRINTSPR003672.5E-117586IPR001471AP2/ERF domain
PRINTSPR003672.5E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENEWEEFQV NSTDSDLELG HDGVVEEDYN DDVFEIKPFV SISRSLSKDD LSTMPTAGFD  60
GPAQRSAKRK RKTHYRGIRQ RPWGKWAAEI RDPIKGARVW LGTFNSAEEA ARAYDVAARR  120
IRGKKAKLNF PEDGTFAQKS HAPRAAPKVP KPSASWEHSF VPAVNNLAKQ NSFVYPSASF  180
ASKHPVVQRD HVSFPHAMSS VAPVEAPVTN IYSDRGTNSF GCPDLGWDYH TKAPHISSTT  240
RISTIAKGDG SLHVKNNTNN LMVPHVMENN AANFEPWMRY LMDNSVDEMI DSLLNFDVPQ  300
DAVGNISEGT EPSISGKRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2374131260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2374131563ATERF1
3gcc_A6e-2374131563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRKTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751640.0AK375164.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086N11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194339.11e-144ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-105ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A287UYM40.0A0A287UYM4_HORVV; Uncharacterized protein
STRINGMLOC_78827.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-31related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]