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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_78652.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
C2H2 |
Protein Properties |
Length: 480aa MW: 51393.9 Da PI: 8.8665 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_78652.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cgk F r nL+ H r H
MLOC_78652.1 64 FVCEICGKGFQRDQNLQLHRRGH 86
89*******************88 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MASEAIPNPF APLTNHNQPQ QQPSSHEHPP APPPKKKRNL PGTPDPDAEV IALSPRTLMA 60 TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLRQRSGKEP RKRVYVCPEK SCVHHNPSRA 120 LGDLTGIKKH FCRKHGEKKW KCDKCAKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS 180 FITHRAFCDA LAEETARLTA ATSGAAAASV LPSMCGGGQG YLFARPNSMM LQPPLAAHLK 240 PAAGGQMLGD PLCDGAAARH GGLSLWGNDN TVPSSMGHHV GSLLSAGGGG APMPMQMYAD 300 LFAPSSGAPP QFDMAQLSWL YGNNGKLSSS NASELTTNSS READSAPSVF SGQQHAKPAA 360 APTDMSATAL LQRAAQIGSV TSSNASMPLE GAFEQAPNSA GRINEHNKFD DRAPFGASQH 420 NAIDPSAMSE LTAATGNVPY DVFSSARHAA LRDAVGREET RDFLGVGMQA LCSSSIHGWI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |