PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78652.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 480aa    MW: 51393.9 Da    PI: 8.8665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78652.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-066486123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++Cgk F r  nL+ H r H
  MLOC_78652.1 64 FVCEICGKGFQRDQNLQLHRRGH 86
                  89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-76386No hitNo description
SMARTSM003550.0126486IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355260105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.66E-7135160No hitNo description
SMARTSM00355210140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MASEAIPNPF APLTNHNQPQ QQPSSHEHPP APPPKKKRNL PGTPDPDAEV IALSPRTLMA  60
TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLRQRSGKEP RKRVYVCPEK SCVHHNPSRA  120
LGDLTGIKKH FCRKHGEKKW KCDKCAKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS  180
FITHRAFCDA LAEETARLTA ATSGAAAASV LPSMCGGGQG YLFARPNSMM LQPPLAAHLK  240
PAAGGQMLGD PLCDGAAARH GGLSLWGNDN TVPSSMGHHV GSLLSAGGGG APMPMQMYAD  300
LFAPSSGAPP QFDMAQLSWL YGNNGKLSSS NASELTTNSS READSAPSVF SGQQHAKPAA  360
APTDMSATAL LQRAAQIGSV TSSNASMPLE GAFEQAPNSA GRINEHNKFD DRAPFGASQH  420
NAIDPSAMSE LTAATGNVPY DVFSSARHAA LRDAVGREET RDFLGVGMQA LCSSSIHGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35136200367Zinc finger protein JACKDAW
5b3h_F4e-35136200367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78652.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191248.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-126IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A3B6EG520.0A0A3B6EG52_WHEAT; Uncharacterized protein
TrEMBLA0A446NC780.0A0A446NC78_TRITD; Uncharacterized protein
STRINGMLOC_78652.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]