PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_78504.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 23042.2 Da PI: 8.2183 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.2e-15 | 2 | 71 | 5 | 48 |
-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l++++++++G++ +W++Iar+++ gRt++++k++w++++ MLOC_78504.3 2 SPQEEHLIIELHARWGNRfgpkedltkaaffhlkqvkhtnilsmyRWSRIARRLP-GRTDNEIKNYWRTHM 71 89*****************************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.17E-7 | 1 | 71 | No hit | No description |
SMART | SM00717 | 4.7E-7 | 1 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.66 | 1 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 2 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-12 | 2 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.68E-8 | 44 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSPQEEHLII ELHARWGNRF GPKEDLTKAA FFHLKQVKHT NILSMYRWSR IARRLPGRTD 60 NEIKNYWRTH MRKKAQERKT DMSPSSSSSS FTYQSCLLET APIIRMDESS THNGTTCFSS 120 VLKSNQSVMD GYSMDQIWKE IEAPAMLPID DTSCSNLPSP LLPFTIGDHY CPPGVIWKMD 180 NGDLKMLAPQ FGYGNGERSC Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_78504.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367218 | 0.0 | AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156608.1 | 1e-107 | myb-related protein MYBAS1-like | ||||
Swissprot | Q53NK6 | 1e-71 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A446R0B7 | 1e-129 | A0A446R0B7_TRITD; Uncharacterized protein | ||||
STRING | MLOC_78504.2 | 1e-152 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 1e-26 | myb domain protein 59 |
Publications ? help Back to Top | |||
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