PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78404.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 267aa    MW: 29853.4 Da    PI: 8.492
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78404.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.8e-161259249
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  ri+++ +r+vtfskR + ++K A+ LS L++++va+i+   +gk+y +
  MLOC_78404.1 12 RIKDDKKRSVTFSKRHANLFKSASNLSALTGVRVAIIVENDSGKMYAF 59
                  89********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-10162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.437363IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-10525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-16776IPR002100Transcription factor, MADS-box
PfamPF003193.8E-191259IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPRTEIRLDI CRIKDDKKRS VTFSKRHANL FKSASNLSAL TGVRVAIIVE NDSGKMYAFG  60
TPAVQPIVDS FLSGNPLSEP LGDEATKGRI KLLQRKVARL DMDNAMLERR ENLSLEHIKN  120
IQVQNPGIAA NNIFSKQENL SLEDLQGLLN DLMRVKEDIR RRLPPLQHGD EPNTGGPNMQ  180
KTQLLPSGPL GDHLKILQVP LQPSSSQYLT PQVMPPIQVT SESQHTMEPH FPSEMFQYLS  240
SPSALEFTPL LQPVPCQVSK MFHCTSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160252.12e-85agamous-like MADS-box protein AGL29
TrEMBLM0Z7H20.0M0Z7H2_HORVV; Uncharacterized protein
STRINGMLOC_78404.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-14AGAMOUS-like 62