PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7814.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CO-like
Protein Properties Length: 432aa    MW: 47310.3 Da    PI: 5.1958
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7814.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33.3e-081861340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + + +++++C  ++ +lC+ C ++ H+       H++v
  MLOC_7814.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 61
                 578*****************************667888888876 PP
2CCT67.63.4e-23372415144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  MLOC_7814.1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 415
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661663IPR000315B-box-type zinc finger
SMARTSM003368.9E-121663IPR000315B-box-type zinc finger
CDDcd000214.72E-91963No hitNo description
PfamPF006437.0E-71961IPR000315B-box-type zinc finger
PROSITE profilePS5101716.083372414IPR010402CCT domain
PfamPF062037.3E-18372414IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSCSGKAAAD GAMGSKAARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
VRLRPTSPLA PRERRRGDEV VPAWFKRKAR TPRSQAKGVG RLLSRRLVVP ESSGGESPEE  120
HKCDVETDEE ELLYRVPIFD PALAELCSPL SLEEATAAVA SCCNEDGVVL ENPTKPTTAM  180
PSPAAVEFFP DSLVNLGPTD AELMEFAADM EALLGRPGMD DGNEEEPFCM EALGLIEPMD  240
VEGGRVKLEI DPMRACGLEQ KPEVSGDMFD IDFDYHYDSP QGTPDENAGS SGASADAQFT  300
PRSLALNLNY DAIMENWGSS PWADDERPNV KLDDCWPHDY YSLHEGAWMM GGVVGHGGEG  360
LGTPRPRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANGAGG  420
GVPVAIATAC VA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382398RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703040.0AK370304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108I12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155509.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLF2E2D30.0F2E2D3_HORVV; Predicted protein
STRINGMLOC_7814.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-70B-box type zinc finger protein with CCT domain