PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77967.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 653aa    MW: 72404.4 Da    PI: 7.3923
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77967.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.31.1e-20197250155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr+ Wt+eLH++F+ea++q+ G e+A P +ilel +v+ Lt+++++SHLQ +Rl
  MLOC_77967.2 197 KPRVAWTTELHNKFLEAINQI-GLEEASPNKILELTNVDYLTRNNIASHLQNHRL 250
                   79*******************.9*******************************8 PP
2Response_reg67.46.3e-23261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+ + +++l+ ++++ +y + ++a d++ +l++l++ +  +Dl+++D++mp+mdG++ll  i  e  +lp+i+++   +++ +l+a++ Ga 
  MLOC_77967.2  26 VLAVDDNCVCLKVLEALMRRCKY-HPTVAMDAKTVLKILRAGKvqFDLVITDVRMPDMDGFKLLDLIVLEM-DLPVIMLSVDCDKKVVLKAINHGAC 120
                   799********************.99*************999999**********************8755.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  ++l +
  MLOC_77967.2 121 DYLVKPVCTNDLKN 134
                   ******99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-3522178No hitNo description
SuperFamilySSF521726.55E-3122147IPR011006CheY-like superfamily
SMARTSM004481.2E-2324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.6325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-2026134IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.82E-2227139No hitNo description
SuperFamilySSF466898.06E-16194254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-22194254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-19197250IPR006447Myb domain, plants
PfamPF002498.2E-7199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MGAMEGDQRQ MMEDATVDKF SEGLRVLAVD DNCVCLKVLE ALMRRCKYHP TVAMDAKTVL  60
KILRAGKVQF DLVITDVRMP DMDGFKLLDL IVLEMDLPVI MLSVDCDKKV VLKAINHGAC  120
DYLVKPVCTN DLKNIWQHVE SRRRSQAISH MSRDNADNQR VHPGNLGSCK DSKNKRNDEY  180
DSNKDKESTH SSTTQKKPRV AWTTELHNKF LEAINQIGLE EASPNKILEL TNVDYLTRNN  240
IASHLQNHRL YLNRGNPNSS GDASERQNSS MNKQRNFMHE HEHERWHVSS GGNPYWNPNY  300
FGATSQLGQL TNKQSNLCMG SLIDGGRLSR YFLPHTRDSR RFADSDDPPI GVDNGILDGI  360
MLDEFSSYNS GTSYVDSMCG KLMKTSKGES PSNLRSYFTN TSNGGGMSAL ANEYQVEPLK  420
SINKYHTHMN EPSTHVVHTV GKPSKFPGFA GTYNNPRWSS MTAIHHRSGT SHVPPRVNIP  480
RINQLTSYKT SSSKMLLQNK MPSFIGNTTS MAGLTEQIVP FNIPTNSRSV GMLNGHNSAP  540
MEPSQMVNGG SIITLPIILN DQISPFNIAN NTTLVGTMMN DNSALGTGRT SMTDINTVNS  600
GRTISTHSNL QTAGFSELTQ MLDDGDADGI LPVQGSMVNQ QDHNDLLNGT SAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20193254162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77967.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0Z6R50.0M0Z6R5_HORVV; Uncharacterized protein
STRINGMLOC_77967.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-77response regulator 12