PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ARR-B | ||||||||
Protein Properties | Length: 653aa MW: 72404.4 Da PI: 7.3923 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 65.3 | 1.1e-20 | 197 | 250 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt+eLH++F+ea++q+ G e+A P +ilel +v+ Lt+++++SHLQ +Rl MLOC_77967.1 197 KPRVAWTTELHNKFLEAINQI-GLEEASPNKILELTNVDYLTRNNIASHLQNHRL 250 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 67.4 | 6.3e-23 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + +++l+ ++++ +y + ++a d++ +l++l++ + +Dl+++D++mp+mdG++ll i e +lp+i+++ +++ +l+a++ Ga MLOC_77967.1 26 VLAVDDNCVCLKVLEALMRRCKY-HPTVAMDAKTVLKILRAGKvqFDLVITDVRMPDMDGFKLLDLIVLEM-DLPVIMLSVDCDKKVVLKAINHGAC 120 799********************.99*************999999**********************8755.9************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp+ ++l + MLOC_77967.1 121 DYLVKPVCTNDLKN 134 ******99988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-35 | 22 | 178 | No hit | No description |
SuperFamily | SSF52172 | 6.55E-31 | 22 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.2E-23 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 37.63 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-20 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.82E-22 | 27 | 139 | No hit | No description |
SuperFamily | SSF46689 | 8.06E-16 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 194 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-19 | 197 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-7 | 199 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MGAMEGDQRQ MMEDATVDKF SEGLRVLAVD DNCVCLKVLE ALMRRCKYHP TVAMDAKTVL 60 KILRAGKVQF DLVITDVRMP DMDGFKLLDL IVLEMDLPVI MLSVDCDKKV VLKAINHGAC 120 DYLVKPVCTN DLKNIWQHVE SRRRSQAISH MSRDNADNQR VHPGNLGSCK DSKNKRNDEY 180 DSNKDKESTH SSTTQKKPRV AWTTELHNKF LEAINQIGLE EASPNKILEL TNVDYLTRNN 240 IASHLQNHRL YLNRGNPNSS GDASERQNSS MNKQRNFMHE HEHERWHVSS GGNPYWNPNY 300 FGATSQLGQL TNKQSNLCMG SLIDGGRLSR YFLPHTRDSR RFADSDDPPI GVDNGILDGI 360 MLDEFSSYNS GTSYVDSMCG KLMKTSKGES PSNLRSYFTN TSNGGGMSAL ANEYQVEPLK 420 SINKYHTHMN EPSTHVVHTV GKPSKFPGFA GTYNNPRWSS MTAIHHRSGT SHVPPRVNIP 480 RINQLTSYKT SSSKMLLQNK MPSFIGNTTS MAGLTEQIVP FNIPTNSRSV GMLNGHNSAP 540 MEPSQMVNGG SIITLPIILN DQISPFNIAN NTTLVGTMMN DNSALGTGRT SMTDINTVNS 600 GRTISTHSNL QTAGFSELTQ MLDDGDADGI LPVQGSMVNQ QDHNDLLNGT SAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-20 | 193 | 254 | 1 | 62 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77967.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0Z6R5 | 0.0 | M0Z6R5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77967.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15285 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 6e-77 | response regulator 12 |