PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 40524.8 Da PI: 10.115 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 88 | 130 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksr 43 + WT+e d +l +a + Wk+++++++ gR++++c +r MLOC_77437.1 88 DEWTEEQDTILRQAYFTARPSphFWKKVSKMVP-GRSAEDCFNR 130 57************98888668***********.*******988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0024 | 86 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 86 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.07E-9 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.68E-7 | 89 | 130 | No hit | No description |
Pfam | PF00249 | 1.2E-6 | 89 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.69 | 90 | 135 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MQEPKPPSRG EDLTGKRKRG TGRKQASKKQ THQEHKSDCQ EIVPITEPQN IIHKKSENNP 60 SSIVQPKIGD EELSGIKEGV QQQCCPSDEW TEEQDTILRQ AYFTARPSPH FWKKVSKMVP 120 GRSAEDCFNR VHADLSTPTP IAPRHRSKTQ FSPLAHFTLS DPKFPNLVEP LTGRPRTAKQ 180 KSLLAQKTVR HLLKKHSLID QAHEADHFSI FETSPSALQL NIPLEDSPGT PENYLKSFSM 240 HKYSVSSSAH KRPLSRLKTK QTEESPAVLK PIKNTVLHEK YITQLSRREG AKKPRKKAAG 300 TNATDPKRPL SEQQAGSVKA AKNALISEAT DFIGQFKKLQ ANSLAHILEN SEDDEDFSVS 360 Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77437.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366596 | 0.0 | AK366596.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198283.1 | 0.0 | uncharacterized protein LOC109784096 | ||||
TrEMBL | A0A287X447 | 0.0 | A0A287X447_HORVV; Uncharacterized protein | ||||
TrEMBL | F2DRS8 | 0.0 | F2DRS8_HORVV; Predicted protein | ||||
STRING | MLOC_77437.1 | 0.0 | (Hordeum vulgare) |