PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_77129.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 237aa MW: 26798.8 Da PI: 6.3094 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.1 | 5.4e-15 | 197 | 237 | 1 | 42 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 kpr+ Wt+eLH++F+ea++q+ G ++A P +ilelm+v+ Lt MLOC_77129.2 197 KPRVAWTTELHNKFLEAINQI-GLDEAAPNKILELMSVDYLT 237 79*******************.9****************998 PP | |||||||
2 | Response_reg | 68 | 4.4e-23 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + +++l+ +l++ +y + + a d++ a+++l++ + +Dl+++D+ mp+mdG++ll+ i e +lp+iv++ +++ +l+ ++ Ga MLOC_77129.2 26 VLAVDDNCVYLKVLEAVLRHCKY-NPTMAMDAKTAMKMLRAGKvqFDLVITDVHMPDMDGFKLLELIGLEM-DLPVIVLSVDCDKKVVLKGINHGAC 120 799********************.9999***********999999**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp+ ++l + MLOC_77129.2 121 DYLMKPVCTNDLKN 134 ******99988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.98E-32 | 22 | 152 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-36 | 23 | 176 | No hit | No description |
SMART | SM00448 | 5.4E-23 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 37.745 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-20 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.45E-21 | 27 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-15 | 194 | 237 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-9 | 194 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-13 | 197 | 237 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MGAMGEDQRR MMEDATVDKS PEGLRVLAVD DNCVYLKVLE AVLRHCKYNP TMAMDAKTAM 60 KMLRAGKVQF DLVITDVHMP DMDGFKLLEL IGLEMDLPVI VLSVDCDKKV VLKGINHGAC 120 DYLMKPVCTN DLKNIWQHVE SRRRSQATSH MSMDNADDQR VLPGTHAMSK DSKDKRNDEY 180 DSNKNKESTH SSTTQKKPRV AWTTELHNKF LEAINQIGLD EAAPNKILEL MSVDYLT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_77129.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-31 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197192.1 | 1e-130 | two-component response regulator ARR12-like | ||||
Swissprot | Q6H805 | 1e-69 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | M0Z4W0 | 1e-176 | M0Z4W0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77129.1 | 1e-177 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 3e-66 | response regulator 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|