PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77129.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 237aa    MW: 26798.8 Da    PI: 6.3094
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77129.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.15.4e-15197237142
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 
                   kpr+ Wt+eLH++F+ea++q+ G ++A P +ilelm+v+ Lt
  MLOC_77129.1 197 KPRVAWTTELHNKFLEAINQI-GLDEAAPNKILELMSVDYLT 237
                   79*******************.9****************998 PP
2Response_reg684.4e-23261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+ + +++l+ +l++ +y + + a d++ a+++l++ +  +Dl+++D+ mp+mdG++ll+ i  e  +lp+iv++   +++ +l+ ++ Ga 
  MLOC_77129.1  26 VLAVDDNCVYLKVLEAVLRHCKY-NPTMAMDAKTAMKMLRAGKvqFDLVITDVHMPDMDGFKLLELIGLEM-DLPVIVLSVDCDKKVVLKGINHGAC 120
                   799********************.9999***********999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  ++l +
  MLOC_77129.1 121 DYLMKPVCTNDLKN 134
                   ******99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-3222152IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-3623176No hitNo description
SMARTSM004485.4E-2324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.74525140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2026134IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.45E-2127139No hitNo description
Gene3DG3DSA:1.10.10.607.2E-15194237IPR009057Homeodomain-like
SuperFamilySSF466891.34E-9194237IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-13197237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGAMGEDQRR MMEDATVDKS PEGLRVLAVD DNCVYLKVLE AVLRHCKYNP TMAMDAKTAM  60
KMLRAGKVQF DLVITDVHMP DMDGFKLLEL IGLEMDLPVI VLSVDCDKKV VLKGINHGAC  120
DYLMKPVCTN DLKNIWQHVE SRRRSQATSH MSMDNADDQR VLPGTHAMSK DSKDKRNDEY  180
DSNKNKESTH SSTTQKKPRV AWTTELHNKF LEAINQIGLD EAAPNKILEL MSVDYLT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-31HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197192.11e-130two-component response regulator ARR12-like
SwissprotQ6H8051e-69ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLM0Z4W01e-176M0Z4W0_HORVV; Uncharacterized protein
STRINGMLOC_77129.11e-177(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-66response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]