PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 221aa MW: 23886.2 Da PI: 5.7145 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 80.3 | 3.4e-25 | 113 | 219 | 2 | 109 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + lL+ecA a+s g+l+ a+ +L +ls++asp++ + +Rl+ayf++A+aarl++s+ ++++ ++ps++s + s + aa+++f++v P+++ ++l+ MLOC_77110.1 113 IALLMECAVAMSVGNLADANGTLLELSQMASPYApSCGERLVAYFARAMAARLMSSWVGVCAPVHPSSAS--SWSGVHAAFRAFYNVAPFVRCAYLA 207 689*******************************8889***********************999888887..477777899**************** PP GRAS 98 aNqaIleavege 109 +NqaIlea+ g+ MLOC_77110.1 208 CNQAILEAFRGK 219 *********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.243 | 86 | 221 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-22 | 113 | 219 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MINHLMSGRC SSVDMHDSSL GLIQFHDHHQ YMYGSSTGPF LPHHHGFISA EEDRCIGKVV 60 PELVEPATAG VAEEVEFGAC KEGEDVAVVG QERQEDAPKQ GEEEKEAHGV RMIALLMECA 120 VAMSVGNLAD ANGTLLELSQ MASPYAPSCG ERLVAYFARA MAARLMSSWV GVCAPVHPSS 180 ASSWSGVHAA FRAFYNVAPF VRCAYLACNQ AILEAFRGKR L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-17 | 93 | 216 | 3 | 124 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162129.1 | 1e-127 | protein SCARECROW-like | ||||
TrEMBL | A0A287G3D7 | 1e-158 | A0A287G3D7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77110.1 | 1e-163 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13813 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 2e-19 | GRAS family protein |