PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77109.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 776aa    MW: 88785.4 Da    PI: 7.0096
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77109.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.47.3e-16170251191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fY+++A  +GF vr+ +++++      +k ++ C+++gk +++++   k++r+ +     C+ak+ vk++ +++we + +++eHnH+l+p
  MLOC_77109.1 170 RFYSTHAMLTGFAVRRGSNYRR------MKFDLECNRSGKLKPTQDL--KRKRRCNALGSRCQAKVIVKLH-NEQWEFIGVKHEHNHPLCP 251
                   5********************9......7889***********9988..555555566789*********9.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-13170251IPR004330FAR1 DNA binding domain
PfamPF105519.0E-31374466IPR018289MULE transposase domain
PROSITE profilePS509668.815656692IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MQAPADNPGE QAPGPVPATS FEQVAMTSPD RAVEPNHPGA GLRSEKEHVG GGALPEGGLR  60
PTGENHQEHA SNGIGTAPQG LLAVILDEQT NSADSKMQQH AEEQDRLHVV TQGHEMSSND  120
TSSGSDSGSS SGSELDTELG KCFYPSFEEL ENSRPPEVGM RFPTLEDAER FYSTHAMLTG  180
FAVRRGSNYR RMKFDLECNR SGKLKPTQDL KRKRRCNALG SRCQAKVIVK LHNEQWEFIG  240
VKHEHNHPLC PSPSLASFFL NHKYLSSEEK LFLRVLQQSR VNPRKAMNIF RRMRSNFRKA  300
SSSNEKDTSN SKCVDQWRKE NSDVETALKR FKELELRNLG FSYTMQKDED NIVRSLFWTD  360
ARSKVDYEIF GDFISFDTTY STNRHNMPFT PIIGMNSHGR IIVFGCALLQ DQKAETFKWM  420
FQTFLDVMGG KLPRIVITDQ DEGMATAISE VMPQVRHRFC KFSVMRKTQE ILGAFMATRG  480
NINAELHGLV DNSLTEKEFE EGWDVLTERY DASENEYLRL MWGTRKNWVP VYFQADFCPF  540
VESAVHCEGT NLLFKDNVLP KDRIEKFIEQ YERMQENIVK AEEEDALHSA TEPAYFSLLP  600
IEKHAARMYT RQIFLRAQKE LYYSTAFNVH EVQGGSAYRL EKVFDYDNPE FNRNSFEVLA  660
EPGTHAFKCQ CAKFTRDGIL CCHIFRVFTQ LGVKEIPARY MLPRWAPKFK EEQLKEYEEK  720
CSKRRENKMR YTMLLGKMAG ISKGICTDGA KSGRLMLELD KVQETLPTTA EENPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178460.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A287GC930.0A0A287GC93_HORVV; Uncharacterized protein
STRINGMLOC_77109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-76FAR1-related sequence 5