PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_76996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 157aa MW: 18166.2 Da PI: 10.9178 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.9 | 5.9e-12 | 2 | 67 | 35 | 91 |
FAR1 35 Cskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 C k+ k++++ k+ ++k++r+++ + tgC+ak++ +++ + w vt+++leHnH+l+p MLOC_76996.1 2 CWKKEKKKRQLKNqektgvpppeKVKRKRKNSIEITGCQAKMVATRK-GEIWLVTSIDLEHNHTLSP 67 66666666555556788999998899999*************99999.****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-10 | 2 | 67 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MCWKKEKKKR QLKNQEKTGV PPPEKVKRKR KNSIEITGCQ AKMVATRKGE IWLVTSIDLE 60 HNHTLSPPDE SKYLRSHKHT TEQEKLFIRT FNSVQMPTRK IMASLSYLRG GNAPYTKKYV 120 SNVRTAINRE NARAICYTCL STLGTSRKRI QLSNMLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 29 | KKRQLKNQEKTGVPPPEKVKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_76996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174630.1 | 4e-44 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M0Z4P0 | 1e-113 | M0Z4P0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_76996.1 | 1e-114 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15170 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-10 | FAR1-related sequence 5 |