PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_76757.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YA | ||||||||
Protein Properties | Length: 341aa MW: 37065.6 Da PI: 8.7367 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.3 | 3.9e-31 | 176 | 232 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF MLOC_76757.3 176 DAPVYVNAKQYEGILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 232 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.9E-35 | 174 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.736 | 175 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-23 | 178 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.7E-28 | 178 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 180 | 200 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.7E-23 | 209 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MMSFKNHHEG FTGQHLVAAA AASQASGGAP LPWWVGSQLL YGEPMGHGKA PPAVPVSMSP 60 PQDACRDGQF QVVPRGGQPL LDAVPLPPQP MPERGIPEAL KFSMAHGKGG NSSEHSAPIT 120 LQSPFTEYND HFELGLGQSV ISSSYYSDQQ YGLLSSYAMR SAYSGRMLIP LNMPADAPVY 180 VNAKQYEGIL RRRRARAKAE KENRLVKARK PYLHESRHLH AMRRARGSGG RFLNTKKETN 240 GKDTGVGSTA MGGNQFMRPT ASLSSEIQHS EQGNPSSVSS LSGSEVTSLY DHEDVDHYHN 300 FEHLRTHFFT PLPSIMDGEH GAGNPFKWAA ASDGCCNLLK A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-17 | 176 | 240 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_76757.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK377024 | 0.0 | AK377024.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145N16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188697.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188698.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188699.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188700.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188701.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
TrEMBL | F2ELJ6 | 0.0 | F2ELJ6_HORVV; Predicted protein | ||||
STRING | MLOC_76757.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 8e-27 | nuclear factor Y, subunit A10 |