PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_76708.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 927aa MW: 105154 Da PI: 6.6169 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.9 | 6.1e-27 | 118 | 205 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++++r+etr+gC a+++++++ +gk+++t+++ +HnH+la MLOC_76708.6 118 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKSPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQLA 205 6********************97766.****************9999.999*************************************97 PP | |||||||
2 | FAR1 | 82.4 | 7.4e-26 | 247 | 333 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +n it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH l MLOC_76708.6 247 EFYSMYAGKIGFNVRRASMTVNAEN-IITRRMFVCSKEGFREKKRGT-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHGL 333 6****************99999555.5****************9988.9**************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-24 | 118 | 205 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 7.3E-22 | 247 | 333 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-22 | 449 | 543 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.3E-9 | 717 | 763 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.93 | 717 | 764 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.8E-7 | 739 | 766 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 927 aa Download sequence Send to blast |
MSSNSGGGAK EKGPQIAMPL VPPPLVQNSM PTDASDGPTT DLRLAQQSWP GHVVMLPCTS 60 WPPHVSLSQP LNPAYPQQNG EAVADVVAAD VLPVINSCDE KMLPEVNMLF DDENNAYEFY 120 NIYAEKVGFF VRRSTLWTTS KNIITRRTFV CSREGFREKK KGAKESKSPR PETRIGCPAS 180 MTIRLTPNGK YRLTEFVPNH NHQLATASTI HLLKAKKIRR KARAVRENLV DDTVVTPEFE 240 NEDEAYEFYS MYAGKIGFNV RRASMTVNAE NIITRRMFVC SKEGFREKKR GTNRVKKPRP 300 ETRTGCPACM VIRLASNGKY NVTEFVTFHN HGLGAAAASD LVMTSLTAGN YQDCGVDLYD 360 ESLDDCYGKQ DLIKDDATSN CLEGRSWKRY KCKVPHYGDV GATLEYLQKM QHDNPSFFYA 420 VKSDEDGNLT NFLWADSKSI MDFTHFGDVV CLDSGYAVQG YGRPIALFTG LNHHRQTVIF 480 GTALLYDESF EAFRWLFDTF KMAMDSTHPK TLLTDRSAVI SEAVAVSWPE TAHRFCVWQI 540 YQNALQQLNQ AFHGSRTLEY NFKRCLFDCE DEAEFLMAWR EMLKNHDLED NQWLADLLAV 600 KEKWALPYDR EAFYADMKSV QQNDNLSSEL KMYLSLEFDL LSFFMQFEKL LCDRRSAELQ 660 FDVSASQSTK KPPSMRILRQ AANVYTPAAY RMFEREFELY MDCMLYNCGE MGTICEYRIT 720 VEDNPKDHFV KYDSLNSMSY CSCKRFEFVG IPCRHMLKVL DTRNIKDIPP QYILRRWRKD 780 ARSGSSNGGY AYSFDGDPQT KRHTLLCRIF SIAAARAATS AESFAYMESQ SSILMGQVEQ 840 FLENNPPDIA ALIGANCDRT QIPVENMITD GLHNHTNNFI NGSADGTCSI KMIPPFLFVA 900 TCINSANCNA DSLTFPFTMG AGTLDYR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_76708.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK376616 | 0.0 | AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150776.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150777.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150778.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150779.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150781.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150782.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020150783.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | M0Z481 | 0.0 | M0Z481_HORVV; Uncharacterized protein | ||||
STRING | MLOC_76708.6 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-102 | FAR1-related sequence 5 |