PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76708.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 801aa MW: 92035.3 Da PI: 6.896

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76708.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	5e-27	17	104	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++++r+etr+gC a+++++++ +gk+++t+++ +HnH+la MLOC_76708.4 17 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKSPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQLA 104 6******************97766.************9999.999***********************************97 PP
2	FAR1	82.7	6.1e-26	146	232	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +n it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH l MLOC_76708.4 146 EFYSMYAGKIGFNVRRASMTVNAEN-IITRRMFVCSKEGFREKKRGT-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHGL 232 6**************99999555.5************9988.9************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-24	17	104	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.0E-22	146	232	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-23	348	442	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	616	663	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-9	616	662	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-7	638	665	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MLPEVNMLFD DENNAYEFYN IYAEKVGFFV RRSTLWTTSK NIITRRTFVC SREGFREKKK 60 GAKESKSPRP ETRIGCPASM TIRLTPNGKY RLTEFVPNHN HQLATASTIH LLKAKKIRRK 120 ARAVRENLVD DTVVTPEFEN EDEAYEFYSM YAGKIGFNVR RASMTVNAEN IITRRMFVCS 180 KEGFREKKRG TNRVKKPRPE TRTGCPACMV IRLASNGKYN VTEFVTFHNH GLGAAAASDL 240 VMTSLTAGNY QDCGVDLYDE SLDDCYGKQD LIKDDATSNC LEGRSWKRYK CKVPHYGDVG 300 ATLEYLQKMQ HDNPSFFYAV KSDEDGNLTN FLWADSKSIM DFTHFGDVVC LDSGYAVQGY 360 GRPIALFTGL NHHRQTVIFG TALLYDESFE AFRWLFDTFK MAMDSTHPKT LLTDRSAVIS 420 EAVAVSWPET AHRFCVWQIY QNALQQLNQA FHGSRTLEYN FKRCLFDCED EAEFLMAWRE 480 MLKNHDLEDN QWLADLLAVK EKWALPYDRE AFYADMKSVQ QNDNLSSELK MYLSLEFDLL 540 SFFMQFEKLL CDRRSAELQF DVSASQSTKK PPSMRILRQA ANVYTPAAYR MFEREFELYM 600 DCMLYNCGEM GTICEYRITV EDNPKDHFVK YDSLNSMSYC SCKRFEFVGI PCRHMLKVLD 660 TRNIKDIPPQ YILRRWRKDA RSGSSNGGYA YSFDGDPQTK RHTLLCRIFS IAAARAATSA 720 ESFAYMESQS SILMGQVEQF LENNPPDIAA LIGANCDRTQ IPVENMITDG LHNHTNNFIN 780 GSADDSLTFP FTMGAGTLDY R

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MLPEVNMLFD DENNAYEFYN IYAEKVGFFV RRSTLWTTSK NIITRRTFVC SREGFREKKK  60
GAKESKSPRP ETRIGCPASM TIRLTPNGKY RLTEFVPNHN HQLATASTIH LLKAKKIRRK  120
ARAVRENLVD DTVVTPEFEN EDEAYEFYSM YAGKIGFNVR RASMTVNAEN IITRRMFVCS  180
KEGFREKKRG TNRVKKPRPE TRTGCPACMV IRLASNGKYN VTEFVTFHNH GLGAAAASDL  240
VMTSLTAGNY QDCGVDLYDE SLDDCYGKQD LIKDDATSNC LEGRSWKRYK CKVPHYGDVG  300
ATLEYLQKMQ HDNPSFFYAV KSDEDGNLTN FLWADSKSIM DFTHFGDVVC LDSGYAVQGY  360
GRPIALFTGL NHHRQTVIFG TALLYDESFE AFRWLFDTFK MAMDSTHPKT LLTDRSAVIS  420
EAVAVSWPET AHRFCVWQIY QNALQQLNQA FHGSRTLEYN FKRCLFDCED EAEFLMAWRE  480
MLKNHDLEDN QWLADLLAVK EKWALPYDRE AFYADMKSVQ QNDNLSSELK MYLSLEFDLL  540
SFFMQFEKLL CDRRSAELQF DVSASQSTKK PPSMRILRQA ANVYTPAAYR MFEREFELYM  600
DCMLYNCGEM GTICEYRITV EDNPKDHFVK YDSLNSMSYC SCKRFEFVGI PCRHMLKVLD  660
TRNIKDIPPQ YILRRWRKDA RSGSSNGGYA YSFDGDPQTK RHTLLCRIFS IAAARAATSA  720
ESFAYMESQS SILMGQVEQF LENNPPDIAA LIGANCDRTQ IPVENMITDG LHNHTNNFIN  780
GSADDSLTFP FTMGAGTLDY R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76708.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376616	0.0	AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150784.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_020150785.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	M0Z478	0.0	M0Z478_HORVV; Uncharacterized protein
STRING	MLOC_76708.6	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1-related sequence 5