PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76708.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 902aa MW: 102556 Da PI: 6.545

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76708.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.9e-27	118	205	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++++r+etr+gC a+++++++ +gk+++t+++ +HnH+la MLOC_76708.3 118 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKSPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQLA 205 6******************97766.************9999.999***********************************97 PP
2	FAR1	82.5	7.1e-26	247	333	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +n it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH l MLOC_76708.3 247 EFYSMYAGKIGFNVRRASMTVNAEN-IITRRMFVCSKEGFREKKRGT-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHGL 333 6**************99999555.5************9988.9************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-24	118	205	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.0E-22	247	333	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.7E-23	449	543	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-9	717	763	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.93	717	764	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-7	739	766	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MSSNSGGGAK EKGPQIAMPL VPPPLVQNSM PTDASDGPTT DLRLAQQSWP GHVVMLPCTS 60 WPPHVSLSQP LNPAYPQQNG EAVADVVAAD VLPVINSCDE KMLPEVNMLF DDENNAYEFY 120 NIYAEKVGFF VRRSTLWTTS KNIITRRTFV CSREGFREKK KGAKESKSPR PETRIGCPAS 180 MTIRLTPNGK YRLTEFVPNH NHQLATASTI HLLKAKKIRR KARAVRENLV DDTVVTPEFE 240 NEDEAYEFYS MYAGKIGFNV RRASMTVNAE NIITRRMFVC SKEGFREKKR GTNRVKKPRP 300 ETRTGCPACM VIRLASNGKY NVTEFVTFHN HGLGAAAASD LVMTSLTAGN YQDCGVDLYD 360 ESLDDCYGKQ DLIKDDATSN CLEGRSWKRY KCKVPHYGDV GATLEYLQKM QHDNPSFFYA 420 VKSDEDGNLT NFLWADSKSI MDFTHFGDVV CLDSGYAVQG YGRPIALFTG LNHHRQTVIF 480 GTALLYDESF EAFRWLFDTF KMAMDSTHPK TLLTDRSAVI SEAVAVSWPE TAHRFCVWQI 540 YQNALQQLNQ AFHGSRTLEY NFKRCLFDCE DEAEFLMAWR EMLKNHDLED NQWLADLLAV 600 KEKWALPYDR EAFYADMKSV QQNDNLSSEL KMYLSLEFDL LSFFMQFEKL LCDRRSAELQ 660 FDVSASQSTK KPPSMRILRQ AANVYTPAAY RMFEREFELY MDCMLYNCGE MGTICEYRIT 720 VEDNPKDHFV KYDSLNSMSY CSCKRFEFVG IPCRHMLKVL DTRNIKDIPP QYILRRWRKD 780 ARSGSSNGGY AYSFDGDPQT KRHTLLCRIF SIAAARAATS AESFAYMESQ SSILMGQVEQ 840 FLENNPPDIA ALIGANCDRT QIPVENMITD GLHNHTNNFI NGSADDSLTF PFTMGAGTLD 900 YR

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MSSNSGGGAK EKGPQIAMPL VPPPLVQNSM PTDASDGPTT DLRLAQQSWP GHVVMLPCTS  60
WPPHVSLSQP LNPAYPQQNG EAVADVVAAD VLPVINSCDE KMLPEVNMLF DDENNAYEFY  120
NIYAEKVGFF VRRSTLWTTS KNIITRRTFV CSREGFREKK KGAKESKSPR PETRIGCPAS  180
MTIRLTPNGK YRLTEFVPNH NHQLATASTI HLLKAKKIRR KARAVRENLV DDTVVTPEFE  240
NEDEAYEFYS MYAGKIGFNV RRASMTVNAE NIITRRMFVC SKEGFREKKR GTNRVKKPRP  300
ETRTGCPACM VIRLASNGKY NVTEFVTFHN HGLGAAAASD LVMTSLTAGN YQDCGVDLYD  360
ESLDDCYGKQ DLIKDDATSN CLEGRSWKRY KCKVPHYGDV GATLEYLQKM QHDNPSFFYA  420
VKSDEDGNLT NFLWADSKSI MDFTHFGDVV CLDSGYAVQG YGRPIALFTG LNHHRQTVIF  480
GTALLYDESF EAFRWLFDTF KMAMDSTHPK TLLTDRSAVI SEAVAVSWPE TAHRFCVWQI  540
YQNALQQLNQ AFHGSRTLEY NFKRCLFDCE DEAEFLMAWR EMLKNHDLED NQWLADLLAV  600
KEKWALPYDR EAFYADMKSV QQNDNLSSEL KMYLSLEFDL LSFFMQFEKL LCDRRSAELQ  660
FDVSASQSTK KPPSMRILRQ AANVYTPAAY RMFEREFELY MDCMLYNCGE MGTICEYRIT  720
VEDNPKDHFV KYDSLNSMSY CSCKRFEFVG IPCRHMLKVL DTRNIKDIPP QYILRRWRKD  780
ARSGSSNGGY AYSFDGDPQT KRHTLLCRIF SIAAARAATS AESFAYMESQ SSILMGQVEQ  840
FLENNPPDIA ALIGANCDRT QIPVENMITD GLHNHTNNFI NGSADDSLTF PFTMGAGTLD  900
YR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76708.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376616	0.0	AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150776.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150777.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150778.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150779.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150781.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150782.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150783.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	M0Z478	0.0	M0Z478_HORVV; Uncharacterized protein
STRING	MLOC_76708.6	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1-related sequence 5