PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_76689.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 110aa MW: 12578.4 Da PI: 9.5655 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.2 | 8.2e-08 | 8 | 34 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 ++++lg+++t+++Aa+a++ a++k++g MLOC_76689.3 8 ASVYLGSYDTEQKAARAYDVAALKYWG 34 789*******99*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.154 | 1 | 42 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-5 | 4 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-11 | 5 | 44 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.83E-13 | 6 | 44 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-11 | 7 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-5 | 8 | 34 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MVFQYGGASV YLGSYDTEQK AARAYDVAAL KYWGLNTKLN FSISEYEKEL ADIQDMSPEE 60 CVTYLRRRSS CFSRGASIYR GVTRWALLFI LFSLFKKAAF SSSKLPKTHM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_76689.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252982 | 1e-123 | AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153211.1 | 1e-45 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Refseq | XP_020174447.1 | 1e-45 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q1PFE1 | 1e-28 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q8LSN2 | 2e-28 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A446VN99 | 7e-53 | A0A446VN99_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_340C2A897.1 | 5e-45 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 9e-31 | AP2 family protein |
Publications ? help Back to Top | |||
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