PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76482.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 295aa    MW: 32628.2 Da    PI: 5.8493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76482.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-056890123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ Cg+ F++   L  H+++H
  MLOC_76482.1 68 YSCSFCGREFRSAQALGGHMNVH 90
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-66594No hitNo description
Gene3DG3DSA:3.30.160.602.4E-46692IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2176895IPR007087Zinc finger, C2H2
PfamPF139123.9E-66891IPR007087Zinc finger, C2H2
SMARTSM003550.0026890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDPAKYWMIT RRKQGDQKAP AVFSTPHITV GGGGGTSSAS YYESWEERAF AEDSAGNLGG  60
CIWPPRSYSC SFCGREFRSA QALGGHMNVH RRDRARLKLS GMVEDGGSVD VHGMPRQQGY  120
VIQPLPCPPP RPSAPSTESN PNSVRSFVSD PGRSLVDAAT ARTIWGKQVL AAPLASPSDT  180
QEHGEKEVFL HDAEVRSEQE LRVGGGELKL SLLGCRTRSV FDDDDKEDDE KIVHPCRKRR  240
RIDLEATQFV TSSSSSEHLQ RDDPHDDDDD DNRRVKVLKL CPSTPAEELD LELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-126390229superman protein
2l1o_A2e-126390229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240RKRRR
2237241KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494380.0AK249438.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf32c06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201188.11e-169uncharacterized protein LOC109787040
TrEMBLA0A3B5ZXW41e-168A0A3B5ZXW4_WHEAT; Uncharacterized protein
TrEMBLA0A452ZFD01e-168A0A452ZFD0_AEGTS; Uncharacterized protein
STRINGMLOC_76482.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-26C2H2 family protein