PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_76418.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

M-type_MADS

Protein Properties

Length: 118aa MW: 13428.1 Da PI: 8.5053

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_76418.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.8	5.2e-27	48	96	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+ + rqv fskRr g++KKA+ELSvLCd+eva+++fs+ g+lye+ MLOC_76418.2 48 RIEDRTSRQVRFSKRRSGLFKKAFELSVLCDVEVALVVFSPAGRLYEFV 96 8***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.352	39	99	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.3E-32	39	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-27	41	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-27	41	107	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.33E-33	44	103	No hit	No description
Pfam	PF00319	1.3E-26	48	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-27	61	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-27	76	97	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MAEGMGRSGM QPQQQEEEEE DEHLKTAAAV EEGGGKRKRK RGRVELRRIE DRTSRQVRFS 60 KRRSGLFKKA FELSVLCDVE VALVVFSPAG RLYEFVSSDT RDIPSTVIDL NIDARDSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	41	99	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_76418.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169632.1	4e-47	MADS-box transcription factor 51-like
Swissprot	Q9XJ61	1e-28	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	M0Z3K2	2e-54	M0Z3K2_HORVV; Uncharacterized protein
STRING	MLOC_76418.1	4e-55	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	2e-26	AGAMOUS-like 14

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]