PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_76252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 155aa MW: 17801.3 Da PI: 10.8389 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102.4 | 3.7e-32 | 27 | 126 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 lfqrlw++e e+++L+G+++f++++g+ +++ d+ fye +++++sf++sk+ql+eK+rrLKkK++ + ++ a++g ++f+++h+ i+++++ MLOC_76252.1 27 LFQRLWTDEEELLILRGFLEFTSRRGTafASHQyDTGPFYEEIRRKLSFDFSKNQLIEKLRRLKKKYRVCATRmASQGAAFAFKSAHEGAIYDVARH 123 79************************99877778**************************************98899******************** PP DUF573 95 iWg 97 iW+ MLOC_76252.1 124 IWR 126 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.9E-29 | 28 | 125 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MPLPLSSPNQ PAQFRRLRRR GRVPRRLFQR LWTDEEELLI LRGFLEFTSR RGTAFASHQY 60 DTGPFYEEIR RKLSFDFSKN QLIEKLRRLK KKYRVCATRM ASQGAAFAFK SAHEGAIYDV 120 ARHIWRPAFK RDGAGGDASD EDDINPAEAA AVAAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_76252.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373813 | 0.0 | AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12. | |||
GenBank | AK376405 | 0.0 | AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186498.1 | 2e-78 | probable transcription factor At3g04930 | ||||
Swissprot | F4K5T4 | 3e-32 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
Swissprot | Q9CAV7 | 5e-32 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A287R733 | 1e-108 | A0A287R733_HORVV; Uncharacterized protein | ||||
STRING | MLOC_76252.1 | 1e-110 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 4e-29 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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