PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9506.57 Da PI: 9.507 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 17 | 60 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ E +l+ +a + +G g +W++++r mg ++t+ +++ ++ MLOC_75951.1 17 WSVRENKLFEEALASYGEGtpdRWHKVSRAMGGTKTADEVRRHY 60 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.031 | 12 | 68 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-8 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.92E-11 | 16 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-5 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-7 | 17 | 60 | No hit | No description |
Pfam | PF00249 | 1.7E-8 | 17 | 60 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MSSGSTNSSR GGANAVWSVR ENKLFEEALA SYGEGTPDRW HKVSRAMGGT KTADEVRRHY 60 EILEEDIKLI ESGRVPFPKY KYRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-24 | 8 | 81 | 2 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75951.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373937 | 3e-80 | AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458271.1 | 9e-37 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-24 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A287L968 | 9e-56 | A0A287L968_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75951.1 | 5e-56 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-26 | RAD-like 6 |